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Report for CCDS49163.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
49163.1 Public Mus musculus 12 Papola 23 108 98 CCDS HistoryNCBI Gene:18789Re-query CCDS DB by CCDS ID:49163.1Re-query CCDS DB by GeneID:18789See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 49163.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000021535.13 ENSMUSP00000021535.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000021535.13Link to Ensembl Protein Viewer:ENSMUSP00000021535.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000021535Re-query CCDS DB by Protein ID:ENSMUSP00000021535
Original member Current member EBI ENSMUST00000109901.8 ENSMUSP00000105527.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000109901.8Link to Ensembl Protein Viewer:ENSMUSP00000105527.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000109901Re-query CCDS DB by Protein ID:ENSMUSP00000105527
Original member Current member NCBI NM_011112.4 NP_035242.1 Accepted alive Link to Nucleotide Sequence:NM_011112.4Link to Protein Sequence:NP_035242.1Re-query CCDS DB by Nucleotide ID:NM_011112Re-query CCDS DB by Protein ID:NP_035242Link to BLAST:NP_035242.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_035242.1 739 Q61183-1 739 100% 0 0

Chromosomal Locations for CCDS 49163.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 12 (NC_000078.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 105784907 105784914 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 105799651 105799824 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 105800684 105800750 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 105804927 105805008 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 105806487 105806596 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 105807165 105807218 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 105808555 105808666 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 105809343 105809432 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 105809524 105809662 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 105811037 105811109 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 105812274 105812394 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 105813198 105813282 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 105818356 105818409 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 105818780 105818899 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 105820341 105820450 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 105823556 105823677 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 105826944 105827086 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 105828281 105828381 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 105829057 105829277 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 105833100 105833162 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 105834710 105834784 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 105836765 105836860 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2220 nt):
ATGCCGTTTCCAGTTACAACGCAGGGATCACAACAAACGCAGCCACCACAGAGGCACTATGGCATTACCT
CTCCTATCAGCTTAGCGGCCCCCAAGGAGACTGACTGCCTACTCACACAGAAGCTCATCGAGACGCTGAA
GCCCTTTGGGGTTTTTGAAGAAGAAGAGGAACTGCAGCGCAGGATTTTAATTTTGGGAAAATTAAATAAC
CTGGTGAAAGAATGGATTCGAGAAATCAGTGAAAGCAAGAATCTCCCACAATCTGTAATTGAAAATGTTG
GAGGGAAGATTTTTACATTTGGATCTTACAGACTAGGAGTCCACACGAAAGGTGCTGATATTGATGCGTT
GTGTGTTGCACCAAGACATGTTGATCGAAGTGACTTTTTCACCTCATTCTATGATAAATTGAAATTACAA
GAAGAAGTGAAAGATTTAAGAGCTGTTGAAGAGGCATTTGTACCAGTTATCAAACTCTGTTTTGATGGAA
TAGAGATTGATATTTTGTTTGCAAGATTAGCACTGCAGACTATTCCAGAAGATTTGGACCTACGAGATGA
CAGTCTGCTTAAAAACCTAGATATAAGATGCATAAGAAGCCTTAATGGTTGCAGGGTAACCGATGAAATT
TTACATCTAGTACCAAACATTGACAACTTCAGGTTAACTCTGAGAGCCATCAAACTGTGGGCCAAACGGC
ACAACATCTATTCCAATATATTAGGTTTCCTCGGTGGTGTTTCCTGGGCTATGCTAGTAGCAAGAACTTG
CCAGCTTTATCCAAATGCAATAGCATCAACTCTTGTACATAAATTTTTCTTGGTATTTTCTAAATGGGAA
TGGCCAAATCCAGTGCTATTGAAACAGCCTGAAGAATGCAATCTTAATTTGCCTGTGTGGGACCCAAGGG
TAAACCCCAGTGATAGGTACCATCTTATGCCTATAATTACACCAGCATACCCACAGCAGAACTCCACGTA
CAATGTGTCCGTTTCAACACGGATGGTCATGGTTGAGGAGTTTAAACAAGGTCTTGCTATCACAGATGAA
ATTTTGCTGAGTAAGGCAGAGTGGTCCAAACTTTTTGAAGCTCCAAACTTCTTTCAGAAGTACAAGCATT
ATATTGTACTTCTAGCAAGTGCGCCCACGGAAAAGCAGCGTCTGGAATGGGTGGGCTTGGTGGAATCAAA
AATCCGCATCCTGGTTGGAAGCTTGGAGAAGAATGAGTTTATTACACTGGCTCATGTGAATCCCCAGTCA
TTTCCAGCCCCCAAAGAAAGTCCTGACAGGGAAGAATTTCGCACAATGTGGGTGATTGGGTTAGTGTTTA
AAAAAACTGAAAACTCTGAAAATCTCAGTGTCGACCTCACCTATGATATCCAGTCTTTCACAGACACAGT
TTATAGGCAAGCAATAAACAGCAAAATGTTTGAGTTGGATATGAAGATTGCAGCAATGCATGTGAAGAGA
AAGCAACTCCATCAGCTGCTGCCTAGTCACGTGCTTCAGAAGAGGAAGAAGCATTCAACAGAAGGAGTCA
AGTTAACAGCTCTGAATGACAGCAGCCTTGACTTGTCTATGGACAGTGATAACAGCATGTCTGTGCCTTC
ACCCACCAGTGCTATGAAGACCAGTCCATTGAATAGTTCTGGCAGCTCCCAGGGCAGAAACAGTCCTGCT
CCAGCTGTGACCGCAGCATCTGTGACCAGCATCCAGGCTTCTGAGGTTTCTGTACCGCAAGCAAATTCCA
GTGAAAGCCCAGGGGGTCCATCGAGCGAAAGCATTCCTCAAACTGCCACACAGCCAGCCATTTCTCCACC
ACCAAAGCCTACAGTCTCCAGAGTTGTCTCCTCAACACGACTGGTAAACCCATCGCCTAGACCTTCAGGA
AACACAGCAACAAAAGTCCCTAATCCTATAGTAGGAGTCAAGAGAACGTCCTCACCCAATAAAGAAGAAA
GTCCTAAGAAAACCAAAACAGAAGAGGATGAAACAAGTGAAGATGCTAACTGTCTTGCTTTGAGTGGACA
TGATAAAACAGAGACAAAGGAACAAGTTGATCTGGAGACAAGTGCGGTTCAATCAGAAACTGTTCCGGCA
TCGGCTTCTCTGTTGGCCTCTCAGAAAACATCCAGTACAGACCTTTCTGATATCCCTGCTCTCCCTGCAA
ATCCTATTCCTGTTATCAAGAATTCAATAAAACTGAGACTGAATCGGTAA

Translation (739 aa):
MPFPVTTQGSQQTQPPQRHYGITSPISLAAPKETDCLLTQKLIETLKPFGVFEEEEELQRRILILGKLNN
LVKEWIREISESKNLPQSVIENVGGKIFTFGSYRLGVHTKGADIDALCVAPRHVDRSDFFTSFYDKLKLQ
EEVKDLRAVEEAFVPVIKLCFDGIEIDILFARLALQTIPEDLDLRDDSLLKNLDIRCIRSLNGCRVTDEI
LHLVPNIDNFRLTLRAIKLWAKRHNIYSNILGFLGGVSWAMLVARTCQLYPNAIASTLVHKFFLVFSKWE
WPNPVLLKQPEECNLNLPVWDPRVNPSDRYHLMPIITPAYPQQNSTYNVSVSTRMVMVEEFKQGLAITDE
ILLSKAEWSKLFEAPNFFQKYKHYIVLLASAPTEKQRLEWVGLVESKIRILVGSLEKNEFITLAHVNPQS
FPAPKESPDREEFRTMWVIGLVFKKTENSENLSVDLTYDIQSFTDTVYRQAINSKMFELDMKIAAMHVKR
KQLHQLLPSHVLQKRKKHSTEGVKLTALNDSSLDLSMDSDNSMSVPSPTSAMKTSPLNSSGSSQGRNSPA
PAVTAASVTSIQASEVSVPQANSSESPGGPSSESIPQTATQPAISPPPKPTVSRVVSSTRLVNPSPRPSG
NTATKVPNPIVGVKRTSSPNKEESPKKTKTEEDETSEDANCLALSGHDKTETKEQVDLETSAVQSETVPA
SASLLASQKTSSTDLSDIPALPANPIPVIKNSIKLRLNR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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