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Report for CCDS49173.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
49173.1 Public Mus musculus 12 Dlk1 23 108 98 CCDS HistoryNCBI Gene:13386Re-query CCDS DB by CCDS ID:49173.1Re-query CCDS DB by GeneID:13386See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 49173.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000109843.7 ENSMUSP00000105469.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000109843.7Link to Ensembl Protein Viewer:ENSMUSP00000105469.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000109843Re-query CCDS DB by Protein ID:ENSMUSP00000105469
Original member NCBI NM_001190703.1 NP_001177632.1 Updated not alive Link to Nucleotide Sequence:NM_001190703.1Link to Protein Sequence:NP_001177632.1Re-query CCDS DB by Nucleotide ID:NM_001190703Re-query CCDS DB by Protein ID:NP_001177632
Current member NCBI NM_001190703.2 NP_001177632.1 Accepted alive Link to Nucleotide Sequence:NM_001190703.2Link to Protein Sequence:NP_001177632.1Re-query CCDS DB by Nucleotide ID:NM_001190703Re-query CCDS DB by Protein ID:NP_001177632Link to BLAST:NP_001177632.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001177632.1 290 Q09163-6 290 99.3103% 0 2

Chromosomal Locations for CCDS 49173.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 12 (NC_000078.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 109453660 109453726 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 109454985 109455048 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 109455493 109455623 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 109458074 109458215 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 109459607 109459832 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 109460118 109460360 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (873 nt):
ATGATCGCGACCGGAGCCCTCCTGCGCGTCCTCTTGCTCCTGCTGGCTTTCGGCCACAGCACCTATGGGG
CTGAATGCGACCCACCCTGTGACCCCCAGTATGGATTCTGCGAGGCTGACAATGTCTGCAGGTGCCATGT
TGGCTGGGAGGGTCCCCTCTGTGACAAGTGTGTAACTGCCCCTGGCTGTGTCAATGGAGTCTGCAAGGAA
CCATGGCAGTGCATCTGCAAGGATGGCTGGGACGGGAAATTCTGCGAAATAGACGTTCGGGCTTGCACCT
CAACCCCCTGCGCCAACAATGGAACTTGCGTGGACCTGGAGAAAGGCCAGTACGAATGCTCCTGCACACC
TGGGTTCTCTGGAAAGGACTGCCAGCACAAGGCTGGGCCCTGCGTGATCAATGGTTCTCCCTGCCAGCAC
GGAGGCGCCTGCGTGGATGATGAGGGCCAGGCCTCGCATGCTTCCTGCCTGTGCCCCCCTGGCTTCTCAG
GCAACTTCTGTGAGATCGTAGCCGCAACCAACAGCTGTACCCCTAACCCATGCGAGAACGATGGCGTCTG
CACCGACATCGGGGGTGACTTCCGTTGCCGCTGCCCAGCTGGATTCGTCGACAAGACCTGCAGCCGCCCG
GCCATCTGCTTCACCATCCTGGGCGTGCTCACCAGCCTGGTGGTGCTGGGCACCGTGGCCATCGTCTTTC
TCAACAAGTGCGAAACCTGGGTGTCCAACCTGCGCTACAACCACATGCTTCGCAAGAAGAAGAACCTCCT
GTTGCAGTATAACAGCGGCGAGGAGCTGGCGGTCAATATCATCTTCCCCGAGAAGATTGACATGACCACT
TTCAACAAGGAGGCTGGTGATGAGGAGATCTAA

Translation (290 aa):
MIATGALLRVLLLLLAFGHSTYGAECDPPCDPQYGFCEADNVCRCHVGWEGPLCDKCVTAPGCVNGVCKE
PWQCICKDGWDGKFCEIDVRACTSTPCANNGTCVDLEKGQYECSCTPGFSGKDCQHKAGPCVINGSPCQH
GGACVDDEGQASHASCLCPPGFSGNFCEIVAATNSCTPNPCENDGVCTDIGGDFRCRCPAGFVDKTCSRP
AICFTILGVLTSLVVLGTVAIVFLNKCETWVSNLRYNHMLRKKKNLLLQYNSGEELAVNIIFPEKIDMTT
FNKEAGDEEI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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