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Report for CCDS49291.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
49291.1 Public Mus musculus 13 Ctsj 23 108 98 CCDS HistoryNCBI Gene:26898Re-query CCDS DB by CCDS ID:49291.1Re-query CCDS DB by GeneID:26898See the combined annotation on chromosome 13 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 49291.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000071526.5 ENSMUSP00000071457.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000071526.5Link to Ensembl Protein Viewer:ENSMUSP00000071457.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000071526Re-query CCDS DB by Protein ID:ENSMUSP00000071457
Original member Current member NCBI NM_012007.2 NP_036137.1 Accepted alive Link to Nucleotide Sequence:NM_012007.2Link to Protein Sequence:NP_036137.1Re-query CCDS DB by Nucleotide ID:NM_012007Re-query CCDS DB by Protein ID:NP_036137Link to BLAST:NP_036137.1

Chromosomal Locations for CCDS 49291.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 13 (NC_000079.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13See the combined annotation on chromosome 13 in Sequence Viewer

Chromosome Start Stop Links
13 61000477 61000579 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 61001327 61001444 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 61002403 61002565 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 61003024 61003248 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 61003707 61003853 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 61003996 61004115 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 61004425 61004550 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1002 nt):
ATGACTCCTACTGTCCTTCTGTTAATCCTGTGCTTTGGAGTGGCCTCAGGTGCCCAAGCACATGATCCCA
AATTGGATGCTGAGTGGAAAGACTGGAAGACTAAATATGCAAAATCATACAGTCCGGAAGAAGCACTGAG
GAGAGCAGTATGGGAAGAAAACATGAGAATGATCAAACTGCACAACAAGGAGAATAGTCTGGGGAAGAAT
AACTTCACCATGAAAATGAATAAATTTGGTGACCAGACCAGTGAAGAATTCAGAAAATCAATAGACAATA
TTCCAATTCCTGCTGCCATGACAGACCCACATGCCCAGAACCATGTATCTATTGGTTTACCCGATTATAA
GGATTGGAGAGAGGAAGGCTATGTGACTCCTGTACGGAATCAGGGTAAATGTGGCTCTTGTTGGGCTTTT
GCTGCAGCTGGTGCCATAGAAGGTCAGATGTTCTGGAAAACTGGCAACCTCACCCCTCTAAGTGTGCAGA
ACCTATTGGACTGTTCTAAAACTGTAGGAAACAAAGGCTGCCAATCGGGTACTGCACACCAAGCATTCGA
GTATGTTTTGAAAAATAAAGGTCTTGAAGCTGAGGCAACCTATCCATACGAAGGAAAAGACGGACCCTGC
AGGTACCGTAGTGAGAACGCTAGTGCTAATATCACAGATTATGTGAACCTCCCACCGAATGAGCTTTACC
TATGGGTTGCTGTAGCATCTATTGGGCCTGTCTCTGCTGCCATTGATGCTTCTCATGACTCTTTCAGGTT
CTACAATGGAGGTATTTATTATGAGCCAAATTGCAGCAGTTACTTTGTGAATCATGCAGTTCTGGTGGTT
GGCTATGGATCTGAGGGAGATGTGAAAGATGGTAATAACTACTGGCTGATCAAGAACAGCTGGGGTGAAG
AATGGGGCATGAATGGCTACATGCAGATTGCCAAAGATCACAACAACCACTGTGGAATTGCTTCACTTGC
CAGCTATCCCAATATATTTTGA

Translation (333 aa):
MTPTVLLLILCFGVASGAQAHDPKLDAEWKDWKTKYAKSYSPEEALRRAVWEENMRMIKLHNKENSLGKN
NFTMKMNKFGDQTSEEFRKSIDNIPIPAAMTDPHAQNHVSIGLPDYKDWREEGYVTPVRNQGKCGSCWAF
AAAGAIEGQMFWKTGNLTPLSVQNLLDCSKTVGNKGCQSGTAHQAFEYVLKNKGLEAEATYPYEGKDGPC
RYRSENASANITDYVNLPPNELYLWVAVASIGPVSAAIDASHDSFRFYNGGIYYEPNCSSYFVNHAVLVV
GYGSEGDVKDGNNYWLIKNSWGEEWGMNGYMQIAKDHNNHCGIASLASYPNIF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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