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Report for CCDS49331.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
49331.1 Public Mus musculus 13 Pde8b 23 108 98 CCDS HistoryNCBI Gene:218461Re-query CCDS DB by CCDS ID:49331.1Re-query CCDS DB by GeneID:218461See the combined annotation on chromosome 13 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 49331.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000162292.7 ENSMUSP00000124068.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000162292.7Link to Ensembl Protein Viewer:ENSMUSP00000124068.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000162292Re-query CCDS DB by Protein ID:ENSMUSP00000124068
Original member NCBI NM_001170669.1 NP_001164140.1 Updated not alive Link to Nucleotide Sequence:NM_001170669.1Link to Protein Sequence:NP_001164140.1Re-query CCDS DB by Nucleotide ID:NM_001170669Re-query CCDS DB by Protein ID:NP_001164140
Current member NCBI NM_001170669.2 NP_001164140.1 Accepted alive Link to Nucleotide Sequence:NM_001170669.2Link to Protein Sequence:NP_001164140.1Re-query CCDS DB by Nucleotide ID:NM_001170669Re-query CCDS DB by Protein ID:NP_001164140Link to BLAST:NP_001164140.1

Chromosomal Locations for CCDS 49331.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 13 (NC_000079.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13See the combined annotation on chromosome 13 in Sequence Viewer

Chromosome Start Stop Links
13 95026120 95026229 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 95027618 95027747 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 95030313 95030480 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 95032830 95032950 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 95034169 95034386 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 95041865 95042063 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 95042900 95043035 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 95043427 95043472 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 95046322 95046486 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 95047737 95047813 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 95049926 95050003 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 95052888 95052930 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 95090278 95090356 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 95095636 95095724 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 95100889 95100946 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 95104653 95104712 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 95107655 95107845 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 95123264 95123323 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 95222475 95222813 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2367 nt):
ATGGGCTGCGCCCCCAGCATCCATGTCTCGCAGAGCGGTGTGATCTACTGCCGGGACTCGGATGAGTCCA
AC
TCGCCCCGCCAGACCAGCAGCGTGTCGCAGGGCCCCACGGCGCCCCTGCACGGCCTCTTCGTGCAGAC
C
GACGCCGCCGACGCCATGCCCCCGAGTCGCGCGGCGGGACCCCCGGGCGCTGTCCGAGTCCGCAGATCC
CGG
GCTGAACTGGGCAGCGGCAGCAGCACGGGGTCCTCGGGCCCCGCCACGACCACCTGCCGGGGCCGGA
GG
CGCCACTGCTGCAGCAGCGCCGAGGCCGAGACCCAGACTAGCTACACCAGCGTCAAGCAGGTGTCTTC
T
GCAGAGGTGCGCATTGGGCCCATGAGACTGACACAGGACCCTATCCAGGTTCTGCTAATCTTCGCAAAG
GAA
GATAGCCAGAGTGATGGCTTCTGGTGGGCCTGTGACAGAGCTGGCTACAGATGCAACATCGCTCGCA
CT
CCAGAGTCGGCCCTCGAGTGCTTTCTGGACAAGCATCATGAAATTATTGTGATCGATCACAGGCAGAG
C
CGGAACTTTGATGCAGAAGCCGTGTGCAGGTCAATCCGGGCCACGAACCCCTCTGAGCACACGGTGATC
CTG
GCTGTCGTTTCACAAGCATCTGATGACCATGAAGAGGCCTCAGTCCTTCCTCTTCTTCATGCAGGCT
TC
AACCGGAGATTTATGGAGAACAGCAGCATAATTGCTTGCTATAATGAACTGATTCAAATAGAACACGG
G
GAAGTTCGCTCACAGTTCAAATTACGGGCCTGTAATTCAGTGTTTACAGCGTTAGACCACTGTCACGAA
GCC
ATAGAAATAACAAGTGATGACCATGTGATTCAGATTCACCGGATTCATCGTGACTCCGGGGACAACT
CT
CAGACAGAGCCTCATTCGTTCAGACACAAGAGCAGGAGGAAAGAGTCCATTGATGTGAAATCAATATC
T
TCTCGGGGCAGTGATGCGCCAAGCCTACAGAATCGCCGCTACCCCTCCATGGCCAGGATCCACTCCATG
ACC
ATTGAGGCTCCCATCACAAAGGTTATAAATATAATCAATGCAGCTCAGGAGAACAGCCCAGTTACAG
TA
GCAGAGGCCTTGGACAGAGTCCTAGAAATTTTACGGACCACAGAACTGTATTCCCCTCAGCTGGGAAC
C
AAAGATGAGGATCCCCACACCAGTGACCTTGTTGGGGGCCTGATGACTGATGGCTTGAGGAGACTGTCA
GGG
AACGAGTATGTGTTTACAAAGAATGTGCACCACAGTCACAGTCACCTCTCGATGCCCATCACCATCA
AT
GATGTCCCCCCAAGTATCGCCCAGCTCCTTGATAATGAGGAAAGCTGGGACTTCAACATCTTTGAATT
G
GAAGCCGTTACACATAAAAGGCCACTTGTGTACCTGGGCTTAAAGGTCTTCTCTCGGTTTGGAGTATGT
GAA
TTTTTAAACTGTACTGAAACCACTCTTCGGGCCTGGCTGCAAGTGATTGAAGCCAACTACCACTCCT
CC
AACGCCTACCACAACTCCACCCATGCTGCCGATGTACTGCATGCCACGGCTTTCTTCCTTGGAAAGGA
A
AGAGTGAAGGGAAGCCTGGACCAGCTGGATGAGGTGGCTGCTCTGATTGCTGCCACAGTCCACGACGTG
GAT
CACCCCGGAAGGACCAACTCTTTCCTGTGCAACGCCGGCAGCGAGCTCGCTGTGCTCTACAATGACA
CT
GCAGTCTTGGAGAGTCACCACACAGCCCTGGCCTTCCAGCTCACAGTCAAGGACACCAAGTGCAACAT
T
TTCAAGAATATTGACAGGAACCACTATCGAACGCTGCGCCAGGCTATTATCGACATGGTTTTGGCTACA
GAG
ATGACAAAACACTTCGAGCACGTGAACAAATTCGTGAACAGCATCAACAAGCCACTGGCAGCTGAGA
GT
GAGGGCAGTGATTGTGAATGCAACCCTACCGGGAAGAACTTTCCTGAGAACCAAATCCTCATCAAACG
C
ATGATGATTAAGTGTGCCGACGTGGCCAACCCGTGCCGGCCCTTGGACCTGTGCATTGAATGGGCTGGA
AGG
ATCTCCGAGGAGTACTTTGCTCAGACTGATGAAGAGAAGAGGCAGGGGCTGCCTGTGGTGATGCCAG
TG
TTCGACCGCAATACCTGCAGCATCCCCAAGTCCCAGATCTCCTTCATCGACTACTTCATAACAGACAT
G
TTTGATGCTTGGGATGCCTTCGCTCACCTGCCTGCCCTGATGCAGCACCTGGCCGATAACTATAAACAC
TGG
AAGACACTGGATGACCTCAAGTGCAAAACTCTGAGACTTCCATCTGACAGCTGA


Translation (788 aa):
MGCAPSIHVSQSGVIYCRDSDESNSPRQTSSVSQGPTAPLHGLFVQTDAADAMPPSRAAGPPGAVRVRRS
R
AELGSGSSTGSSGPATTTCRGRRRHCCSSAEAETQTSYTSVK
QVSSAEVRIGPMRLTQDPIQVLLIFAK
E
DSQSDGFWWACDRAGYRCNIARTPESALECFLDKHHEIIVIDHRQSRNFDAEAVC
RSIRATNPSEHTVI
L
AVVSQ
ASDDHEEASVLPLLHAGFNRRFMENSSIIACYNELIQIEHGEVRSQFKLRACNSVFTALDHCHE
A
IEITSDDHVIQ
IHRIHRDSGDNSQTEPHSFRHKSRRKESIDVKSISSRGSDAPSLQNRRYPSMARIHSM
T
IEAPITK
VINIINAAQENSPVTVAEALDRVLEILRTTELYSPQLGTKDEDPHTSDLVGGLMTDGLRRLS
G
NEYVFTK
NVHHSHSHLSMPITINDVPPSIAQLLDNEESWDFNIFELEAVTHKRPLVYLGLKVFSRFGVC
E
FLNCTETTLRAWLQVIEANYHSSNAYHNSTHAADVLHATAFFLGKERVK
GSLDQLDEVAALIAATVHDV
D
HPGRTNSFLCNAGSELAVLYNDTAVLESHHTALAFQLTVKDTKCNIFKNID
RNHYRTLRQAIIDMVLAT
E
MTKHFEHVNKFVNSINKPLAAE
SEGSDCECNPTGKNFPENQILIKRMMIKCADVANPCRPLDLCIEWAG
R
ISEEYFAQ
TDEEKRQGLPVVMPVFDRNTCSIPKSQISFIDYFITDMFDAWDAFAHLPALMQHLADNYKH
W
KTLDDLKCKTLRLPSDS




Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser