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Report for CCDS49526.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
49526.1 Public Mus musculus 14 Ptk2b 23 108 98 CCDS HistoryNCBI Gene:19229Re-query CCDS DB by CCDS ID:49526.1Re-query CCDS DB by GeneID:19229See the combined annotation on chromosome 14 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 49526.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000022622.13 ENSMUSP00000022622.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000022622.13Link to Ensembl Protein Viewer:ENSMUSP00000022622.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000022622Re-query CCDS DB by Protein ID:ENSMUSP00000022622
Original member Current member EBI ENSMUST00000178730.7 ENSMUSP00000137008.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000178730.7Link to Ensembl Protein Viewer:ENSMUSP00000137008.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000178730Re-query CCDS DB by Protein ID:ENSMUSP00000137008
Original member Current member NCBI NM_001162366.2 NP_001155838.1 Accepted alive Link to Nucleotide Sequence:NM_001162366.2Link to Protein Sequence:NP_001155838.1Re-query CCDS DB by Nucleotide ID:NM_001162366Re-query CCDS DB by Protein ID:NP_001155838Link to BLAST:NP_001155838.1
Original member Current member NCBI NM_001360233.1 NP_001347162.1 Accepted alive Link to Nucleotide Sequence:NM_001360233.1Link to Protein Sequence:NP_001347162.1Re-query CCDS DB by Nucleotide ID:NM_001360233Re-query CCDS DB by Protein ID:NP_001347162Link to BLAST:NP_001347162.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001155838.1 1009 Q9QVP9 1009 100% 0 0
NP_001347162.1 1009 Q9QVP9 1009 100% 0 0

Chromosomal Locations for CCDS 49526.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 14 (NC_000080.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14See the combined annotation on chromosome 14 in Sequence Viewer

Chromosome Start Stop Links
14 66154054 66154269 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 66155972 66156052 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 66156290 66156427 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 66157061 66157107 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 66158048 66158072 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 66158384 66158419 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 66158531 66158677 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 66163025 66163150 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 66165264 66165329 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 66166667 66166775 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 66169243 66169447 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 66170238 66170327 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 66170484 66170584 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 66171683 66171798 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 66172059 66172159 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 66172476 66172560 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 66173306 66173403 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 66173838 66173888 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 66174749 66174795 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 66175173 66175212 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 66175624 66175741 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 66177063 66177164 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 66177692 66177766 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 66178036 66178176 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 66178592 66178646 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 66178831 66178893 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 66187443 66187522 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 66189574 66189661 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 66190056 66190234 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 66213312 66213515 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3030 nt):
ATGTCCGGGGTGTCTGAGCCCTTGAGCCGTGTAAAAGTGGGCACTTTACGCCGGCCTGAGGGCCCCCCAG
AGCCCATGGTGGTGGTACCAGTGGATGTGGAGAAGGAAGACGTGCGCATCCTCAAGGTCTGCTTCTACAG
CAACAGCTTCAACCCAGGGAAGAACTTCAAGCTTGTCAAATGCACAGTGCAGACAGAGATCCAGGAGATC
ATCACCTCCATCCTCCTGAGTGGGCGAATAGGGCCCAACATCCAGCTGGCTGAATGCTATGGGCTGAGGC
TGAAGCACATGAAGTCAGACGAGATCCACTGGCTGCACCCACAGATGACCGTGGGCGAAGTGCAGGACAA
GTATGAATGTCTACACGTGGAAGCTGAGTGGAGGTATGACCTTCAAATCCGCTACTTGCCGGAAGACTTC
ATGGAGAGCCTGAAAGAAGACAGGACCACATTGCTGTACTTTTATCAACAGCTCCGGAATGACTACATGC
AACGCTACGCCAGCAAGGTCAGTGAAGGCATGGCTCTGCAGCTGGGCTGTCTGGAGCTCAGGAGATTCTT
CAAGGACATGCCCCACAATGCACTGGACAAAAAGTCCAACTTTGAACTCCTGGAAAAAGAAGTCGGTCTG
GACCTGTTTTTCCCAAAGCAGATGCAGGAAAACTTAAAGCCCAAGCAGTTCCGGAAGATGATCCAGCAGA
CCTTCCAGCAGTATGCATCACTCCGGGAGGAAGAGTGTGTCATGAAATTCTTCAATACCCTAGCGGGCTT
TGCCAACATTGACCAGGAGACCTACCGCTGCGAACTCATTCAAGGATGGAACATTACTGTGGACCTGGTC
ATCGGCCCTAAAGGCATCCGTCAGCTGACAAGTCAAGATACAAAGCCCACCTGCCTGGCCGAGTTTAAGC
AGATCAAATCCATCAGGTGCCTCCCATTGGAAGAGACCCAGGCAGTCCTGCAGCTGGGCATCGAGGGTGC
CCCCCAGTCCTTGTCTATCAAAACGTCGTCCCTGGCAGAGGCTGAGAACATGGCTGACCTCATAGATGGC
TACTGCAGGCTGCAAGGAGAACATAAGGGCTCTCTCATCATGCATGCCAAGAAAGATGGTGAGAAGAGGA
ACAGCCTGCCTCAGATCCCCACACTAAACCTGGAGGCTCGGCGGTCGCACCTCTCAGAAAGCTGCAGCAT
AGAGTCAGACATCTATGCGGAGATTCCCGATGAGACCCTGCGAAGACCAGGAGGTCCACAGTACGGTGTT
GCCCGTGAAGAAGTAGTTCTTAACCGCATTCTGGGTGAAGGCTTCTTTGGGGAGGTCTATGAAGGTGTCT
ACACGAACCACAAAGGGGAAAAAATTAATGTGGCCGTCAAGACCTGTAAGAAAGACTGTACCCAGGACAA
CAAGGAGAAGTTCATGAGTGAGGCAGTGATCATGAAGAATCTTGACCACCCTCACATCGTGAAGCTGATT
GGCATCATTGAAGAGGAACCCACCTGGATTATCATGGAACTGTATCCTTATGGGGAGCTGGGACACTACC
TGGAACGAAATAAAAACTCCCTGAAGGTACCCACTCTGGTCCTGTACACCCTACAGATATGCAAAGCCAT
GGCCTATCTGGAGAGCATCAACTGTGTGCACAGGGATATTGCTGTCCGGAACATCCTGGTGGCCTCTCCT
GAGTGTGTGAAGCTGGGGGACTTTGGGCTCTCCCGGTACATTGAGGACGAAGACTATTACAAAGCCTCTG
TGACCCGTCTACCCATCAAATGGATGTCCCCCGAGTCCATCAACTTCCGCCGCTTCACAACCGCCAGTGA
TGTCTGGATGTTTGCTGTATGCATGTGGGAGATCCTCAGCTTTGGGAAGCAGCCTTTCTTCTGGCTCGAA
AATAAGGATGTCATCGGAGTGCTGGAGAAAGGGGACAGGCTGCCCAAGCCCGAACTCTGTCCGCCTGTCC
TTTACACACTCATGACTCGCTGCTGGGACTACGACCCCAGTGACCGGCCCCGCTTCACGGAGCTTGTGTG
CAGCCTCAGTGACATTTATCAGATGGAGAAGGACATTGCCATAGAGCAAGAAAGGAATGCTCGCTACCGA
CCCCCCAAAATATTGGAGCCTACTACCTTTCAGGAACCCCCACCCAAGCCCAGCCGGCCCAAGTACAGAC
CTCCTCCACAGACCAACCTGCTGGCTCCTAAGCTGCAGTTCCAGGTCCCTGAGGGTCTGTGTGCCAGCTC
TCCTACGCTTACCAGCCCTATGGAGTATCCATCTCCAGTTAACTCGCTACACACCCCACCTCTCCACCGG
CACAATGTCTTCAAGCGCCACAGCATGCGGGAGGAGGACTTCATCCGGCCCAGTAGCCGAGAAGAGGCCC
AGCAGCTCTGGGAGGCAGAGAAGATCAAGATGAAGCAGGTCCTAGAAAGACAGCAGAAGCAGATGGTGGA
AGATTCCCAGTGGCTGAGGCGAGAGGAAAGATGCTTGGACCCTATGGTTTATATGAATGACAAGTCCCCA
CTGACTCCAGAGAAGGAGGCCGGCTACACGGAGTTCACAGGGCCCCCACAGAAACCACCTCGGCTCGGTG
CACAGTCCATTCAGCCCACAGCCAACCTGGACAGGACCGATGACCTCGTGTACCACAATGTCATGACCCT
GGTGGAGGCTGTGCTGGAACTCAAGAACAAGCTTGGCCAGTTGCCCCCTGAGGACTATGTGGTGGTGGTG
AAGAACGTGGGGCTGAACCTGCGGAAGCTCATCGGCAGTGTGGACGATCTCTTGCCCTCCTTGCCGGCAT
CTTCGAGGACAGAGATTGAAGGGACCCAGAAACTGCTCAACAAAGACCTGGCAGAGCTCATCAACAAGAT
GAAGTTGGCTCAGCAGAACGCCGTGACGTCCCTGAGTGAGGACTGCAAGCGGCAGATGCTCACAGCGTCC
CATACCCTGGCTGTGGATGCCAAGAACCTGCTGGATGCTGTGGACCAAGCCAAGGTTGTGGCTAATCTGG
CCCACCCGCCTGCAGAGTGA

Translation (1009 aa):
MSGVSEPLSRVKVGTLRRPEGPPEPMVVVPVDVEKEDVRILKVCFYSNSFNPGKNFKLVKCTVQTEIQEI
ITSILLSGRIGPNIQLAECYGLRLKHMKSDEIHWLHPQMTVGEVQDKYECLHVEAEWRYDLQIRYLPEDF
MESLKEDRTTLLYFYQQLRNDYMQRYASKVSEGMALQLGCLELRRFFKDMPHNALDKKSNFELLEKEVGL
DLFFPKQMQENLKPKQFRKMIQQTFQQYASLREEECVMKFFNTLAGFANIDQETYRCELIQGWNITVDLV
IGPKGIRQLTSQDTKPTCLAEFKQIKSIRCLPLEETQAVLQLGIEGAPQSLSIKTSSLAEAENMADLIDG
YCRLQGEHKGSLIMHAKKDGEKRNSLPQIPTLNLEARRSHLSESCSIESDIYAEIPDETLRRPGGPQYGV
AREEVVLNRILGEGFFGEVYEGVYTNHKGEKINVAVKTCKKDCTQDNKEKFMSEAVIMKNLDHPHIVKLI
GIIEEEPTWIIMELYPYGELGHYLERNKNSLKVPTLVLYTLQICKAMAYLESINCVHRDIAVRNILVASP
ECVKLGDFGLSRYIEDEDYYKASVTRLPIKWMSPESINFRRFTTASDVWMFAVCMWEILSFGKQPFFWLE
NKDVIGVLEKGDRLPKPELCPPVLYTLMTRCWDYDPSDRPRFTELVCSLSDIYQMEKDIAIEQERNARYR
PPKILEPTTFQEPPPKPSRPKYRPPPQTNLLAPKLQFQVPEGLCASSPTLTSPMEYPSPVNSLHTPPLHR
HNVFKRHSMREEDFIRPSSREEAQQLWEAEKIKMKQVLERQQKQMVEDSQWLRREERCLDPMVYMNDKSP
LTPEKEAGYTEFTGPPQKPPRLGAQSIQPTANLDRTDDLVYHNVMTLVEAVLELKNKLGQLPPEDYVVVV
KNVGLNLRKLIGSVDDLLPSLPASSRTEIEGTQKLLNKDLAELINKMKLAQQNAVTSLSEDCKRQMLTAS
HTLAVDAKNLLDAVDQAKVVANLAHPPAE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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