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Report for CCDS49768.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
49768.1 Public Mus musculus 16 Mrtfb 23 108 98 CCDS HistoryNCBI Gene:239719Re-query CCDS DB by CCDS ID:49768.1Re-query CCDS DB by GeneID:239719See the combined annotation on chromosome 16 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 49768.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000009713.13 ENSMUSP00000009713.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000009713.13Link to Ensembl Protein Viewer:ENSMUSP00000009713.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000009713Re-query CCDS DB by Protein ID:ENSMUSP00000009713
Original member Current member NCBI NM_001122667.2 NP_001116139.1 Accepted alive Link to Nucleotide Sequence:NM_001122667.2Link to Protein Sequence:NP_001116139.1Re-query CCDS DB by Nucleotide ID:NM_001122667Re-query CCDS DB by Protein ID:NP_001116139Link to BLAST:NP_001116139.1

Chromosomal Locations for CCDS 49768.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 16 (NC_000082.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 13326418 13326571 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 13378264 13378329 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 13379840 13379895 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 13381528 13381603 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 13384194 13384355 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 13385606 13385784 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 13394823 13394960 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 13398224 13398486 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 13400080 13400179 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 13400653 13401684 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 13403155 13403310 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 13405249 13405407 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 13405765 13405902 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 13409617 13409677 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 13412160 13412695 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3276 nt):
ATGGATCACACAGGAGCCATAGACACAGAGGAAGAGCTGGGGCCTCTAGCCCATCTTGCACCAAGTCCTC
AAAGTGAGTCTGTGGCTCACGAATTCCAGGAACTGTCTCTACAGTCCAGCCAGCACTTACCCACTCTGAA
CGAACGGAAAAATGTGCTCCAGCTGAGGCTGCAACAAAGGAGGACAAGAGAACAACTAGTGGACCAGGGC
ATCATGCCACCTTTGAAGAGTCCAGCAGCATTCCATGAGCAGATAAAAAGCCTGGAGCGAGCCAGAACTG
AGAATTTTCTGAAGCACAAGATCCGGAGCCGCCCAGACCGCTCTGAGCTTGTCAGGATGCATATTTTAGA
AGAAACGTTTGCAGAGCCATCTCTTCAGGCCACACAGATGAAGCTGAAGAGAGCTCGGCTGGCAGATGAC
CTGAACGAGAAGATTGCTCAAAGGCCTGGTCCCATGGAGCTGGTGGAGAAGAACATCCTTCCTGTGGATT
CGAGTGTCAAGGAAGCGATTATAGGTGTGGTGAAGGAGGACTATCCTCACACTCATGGCGAGTTCTCATT
TGATGAAGATAGCAGTGATGCTTTGTCTCCAGACCAGCCAGCGAGCCAGGAGTCTCAGGGCTCAGCTGCA
TCCCCCAGTGAGCCAAAAGTCAGTGCCTCGCCACCTCCTGTGACTGCAAGCACTCCAGCCCAGTTTACCT
CAGTGTCCCCAGCAGTTCCTGAATTCTTGAAAACCCCTCTAACTGCAGACCAGCCTCCCACAAGGTCTAC
AGCTCCCGTGCTCCCTACAAACACTGTGTCCTCAGCGAAGTCTGGCCCAATGCTGGTGAAGCAAAGCCAT
CCCAAGAATCCAAACGACAAACACCGTAGCAAAAAATGCAAAGATCCGAAACCGCGAGTGAAGAAGCTTA
AGTACCACCAGTACATTCCACCCAACCAGAAGGGGGAGAAGAGCGAGCCACAGATGGACTCCAACTATGC
CCGCCTGCTCCAGCAGCAGCAGCTCTTCCTACAGCTGCAGATCCTGAGCCAGCAGCAGCAGCAACAGCAG
CAGCAGCACTACAACTACCAGACCATCCTACCTGCACCCATCAAAACTGACAAGAACAGCAGCAGCGGCA
GTAACAGCGGCAGTAGCAGCAGCATGCCGGCGAGGAGGCCAGGACCGCTGCCCTCCAGCTTGGATGACTT
AAAGGTGTCAGAGCTGAAGACAGAACTCAAACTGAGGGGTCTGCCAGTGTCAGGAACTAAACCAGACCTC
ATTGAACGCCTGAAACCCTACCAGGAAGTGACCAGTAGTAACCTTGCCACTGGCAGTATTGTGGCAGTGT
CATCAGCAACCATTGTCACCAGTAACCCAGAGGTCACAGTGGCACTGCCAGTCACAACACTGCATAATGC
TGTAACAAGCTCTGTGTCCACTTTCAAGGCAGACTTGGCACTTCCTGCAACCAGCAGTGTGCCCCATGTT
GAAAATGCCCACTCTCCTCTGCCCATCTCCCCATCACCCTCTGAGCAGTCCAGTCTCAGTACCGATGACA
CAAACATGACAGACACCTTCACAGAGATCATGACTATGATGTCACCTTCCCAGTTGTTGTGTTCATCTCC
CCTGAGGGTGGTGAGCCATGATGACAGCCTGAGCCCTTCCAGTAGCACCCTGTCTACTCTAGAACTGGAT
GCTGCTGAGAAGGACCGCAAACTTCAGGAGAAGGAGAAACAGATTGAAGAACTGAAGAGGAAACTGGAAC
AAGAACAGAAGCTTGTGGAGGTCCTCAAGATGCAGCTTGAGGTGGAAAAACGTGGGCAGCAGCGACCACC
AGACCCTCAGCCCAGTGATCCCCCACATCCCTTTAATACATCAGATCCTAAACATGGCAGTGTTGGGTCC
TCCATCAAGGATGAGGCCTCACTCCCTGACTGCTCCAGCCCCCAGCAGCCCATCACAGTGCCTGGCCACT
CTGTAGGCCAGCCCATCTCCACGGGTAGCCAGACCCTTGTTGCCAAAAAGACTGTGGTCGTCAAGCAAGA
GGTCCCCATGGCCCAAGCAGAGCAGCAGAACGTTGTCTCGCAGTTCTACCTTAGTTCCCAGGGACAGCCA
CCTGCCCTTGTTGCTCAGCCTCAGGCCTTACTGACCACACAGACAACTCAGCTGCTGCTGCCAGTGTCCA
TCCAGGGCTCAAATGTTACTTCAGTGCAACTCCCAGTAGGCAGCCTTCAACTCCAGACCCCAGCACAAGG
AAGAGTCCAGGCTCAGCCTCATGTAGCTGCTGCCACACAGGTTCCAGCTGCAGCCCTGCCCTCAGCCTTG
ACCTCAGCACTGCCTCAGAAGCAGGAAGCCTTCCCACAGCACGTGTTGGGCCAGCCTCAGCCAGTCAGAA
AGGTCTTCACAAACTCGGCACCAAACACAGTTCTTCAGTATCAGAGGCAGCCTGGCCCAACGAACCAGCA
GCCCTTTGTCAGTAAGACCTCTAACCCTGCTCTTCAATCCAGAACTGCCCCACTTGCACCCCTGCAAAAT
GGACCCAGCCTAGCCAGCAAGCCTAGCTCACCACCCCCACCCCAGCAGTTTGTTGTTCAGCACTCTTTGT
TTGCAACCCCAATCACGAAGACAAAAGATCCACCTCGATATGAGGAAGCCATCAAGCAGGCACGTAGCAC
ACAGCCAGCCCTTCCAGAGGTTTCCAGTGTGCACAGTCAGCAGATGGACGACCTCTTCGACATCCTCATA
AAGAGTGGAGAGATTTCCTTCCCAATAAAAGAAGAGCCTTCTCCAATTTCCAAGATGAAACCAGTGACAG
CCAGCATCACCACAATGCCAGTCAATACCGTGGTCTCTCGACCACCGCCCCAGGTCCAAATAGCACCACC
TGTATCCTTAGAACCTGTGAACAGTTTATCTGCCAGCTTAGAGAACCAGCTAGAAGCCTTCTTGGATGGC
ACTTTGCCCTCGGCCACTGACACTGGCCCACTGCAGAACAGCAGTGAAGATAGAGAGTCTTTCTCTCTGA
TCGAGGATCTGCAGAACGACTTGCTGAGTCATTCCAGCATGCTGTACCAGTCTCACTCTCCCATGGAGAC
CTCTGAGGCCCAGTTGGTGTCAGGGACCCCCTGTCTATCTCTTGACCTGTCAGACTCCAACCTGGACAAC
ATGGAGTGGCTAGACATTACCATGCCCACCACATCCTCCGGGCTCACTCCACTGAGTACCACTGCGCCAA
GCATGTTCTCTGCTGATTTTCTGGACCCACAGGACCTGCCGCTGCCATGGGACTAA

Translation (1091 aa):
MDHTGAIDTEEELGPLAHLAPSPQSESVAHEFQELSLQSSQHLPTLNERKNVLQLRLQQRRTREQLVDQG
IMPPLKSPAAFHEQIKSLERARTENFLKHKIRSRPDRSELVRMHILEETFAEPSLQATQMKLKRARLADD
LNEKIAQRPGPMELVEKNILPVDSSVKEAIIGVVKEDYPHTHGEFSFDEDSSDALSPDQPASQESQGSAA
SPSEPKVSASPPPVTASTPAQFTSVSPAVPEFLKTPLTADQPPTRSTAPVLPTNTVSSAKSGPMLVKQSH
PKNPNDKHRSKKCKDPKPRVKKLKYHQYIPPNQKGEKSEPQMDSNYARLLQQQQLFLQLQILSQQQQQQQ
QQHYNYQTILPAPIKTDKNSSSGSNSGSSSSMPARRPGPLPSSLDDLKVSELKTELKLRGLPVSGTKPDL
IERLKPYQEVTSSNLATGSIVAVSSATIVTSNPEVTVALPVTTLHNAVTSSVSTFKADLALPATSSVPHV
ENAHSPLPISPSPSEQSSLSTDDTNMTDTFTEIMTMMSPSQLLCSSPLRVVSHDDSLSPSSSTLSTLELD
AAEKDRKLQEKEKQIEELKRKLEQEQKLVEVLKMQLEVEKRGQQRPPDPQPSDPPHPFNTSDPKHGSVGS
SIKDEASLPDCSSPQQPITVPGHSVGQPISTGSQTLVAKKTVVVKQEVPMAQAEQQNVVSQFYLSSQGQP
PALVAQPQALLTTQTTQLLLPVSIQGSNVTSVQLPVGSLQLQTPAQGRVQAQPHVAAATQVPAAALPSAL
TSALPQKQEAFPQHVLGQPQPVRKVFTNSAPNTVLQYQRQPGPTNQQPFVSKTSNPALQSRTAPLAPLQN
GPSLASKPSSPPPPQQFVVQHSLFATPITKTKDPPRYEEAIKQARSTQPALPEVSSVHSQQMDDLFDILI
KSGEISFPIKEEPSPISKMKPVTASITTMPVNTVVSRPPPQVQIAPPVSLEPVNSLSASLENQLEAFLDG
TLPSATDTGPLQNSSEDRESFSLIEDLQNDLLSHSSMLYQSHSPMETSEAQLVSGTPCLSLDLSDSNLDN
MEWLDITMPTTSSGLTPLSTTAPSMFSADFLDPQDLPLPWD


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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