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Report for CCDS49864.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
49864.2 Public Mus musculus 16 Retnla 23 108 98 CCDS HistoryNCBI Gene:57262Re-query CCDS DB by CCDS ID:49864.2Re-query CCDS DB by GeneID:57262See the combined annotation on chromosome 16 in Sequence Viewer

Public Note for CCDS 49864.1
The coding region has been updated to start at a downstream in-frame start codon that is supported by conservation data.

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)


Attributes
CDS uses downstream AUG

Sequence IDs included in CCDS 49864.2

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000238847.1 ENSMUSP00000159097.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000238847.1Link to Ensembl Protein Viewer:ENSMUSP00000159097.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000238847Re-query CCDS DB by Protein ID:ENSMUSP00000159097
Original member Current member NCBI NM_020509.4 NP_065255.3 Accepted alive Link to Nucleotide Sequence:NM_020509.4Link to Protein Sequence:NP_065255.3Re-query CCDS DB by Nucleotide ID:NM_020509Re-query CCDS DB by Protein ID:NP_065255Link to BLAST:NP_065255.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_065255.3 111 Q9EP95 111 100% 0 0

Chromosomal Locations for CCDS 49864.2

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 16 (NC_000082.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 48842817 48842943 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 48843553 48843633 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 48844174 48844301 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (336 nt):
ATGAAGACTACAACTTGTTCCCTTCTCATCTGCATCTCCCTGCTCCAGCTGATGGTCCCAGTGAATACTG
ATGAGACCATAGAGATTATCGTGGAGAATAAGGTCAAGGAACTTCTTGCCAATCCAGCTAACTATCCCTC
CACTGTAACGAAGACTCTCTCTTGCACTAGTGTCAAGACTATGAACAGATGGGCCTCCTGCCCTGCTGGG
ATGACTGCTACTGGGTGTGCTTGTGGCTTTGCCTGTGGATCTTGGGAGATCCAGAGTGGAGATACTTGCA
ACTGCCTGTGCTTACTCGTTGACTGGACCACTGCCCGCTGCTGCCAACTGTCCTAA

Translation (111 aa):
MKTTTCSLLICISLLQLMVPVNTDETIEIIVENKVKELLANPANYPSTVTKTLSCTSVKTMNRWASCPAG
MTATGCACGFACGSWEIQSGDTCNCLCLLVDWTTARCCQLS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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