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Report for CCDS49907.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
49907.1 Public Mus musculus 16 Synj1 23 108 98 CCDS HistoryNCBI Gene:104015Re-query CCDS DB by CCDS ID:49907.1Re-query CCDS DB by GeneID:104015See the combined annotation on chromosome 16 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 49907.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000121759.7 ENSMUSP00000113308.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000121759.7Link to Ensembl Protein Viewer:ENSMUSP00000113308.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000121759Re-query CCDS DB by Protein ID:ENSMUSP00000113308
Original member NCBI NM_001164483.1 NP_001157955.1 Updated not alive Link to Nucleotide Sequence:NM_001164483.1Link to Protein Sequence:NP_001157955.1Re-query CCDS DB by Nucleotide ID:NM_001164483Re-query CCDS DB by Protein ID:NP_001157955
Current member NCBI NM_001164483.2 NP_001157955.1 Accepted alive Link to Nucleotide Sequence:NM_001164483.2Link to Protein Sequence:NP_001157955.1Re-query CCDS DB by Nucleotide ID:NM_001164483Re-query CCDS DB by Protein ID:NP_001157955Link to BLAST:NP_001157955.1

Chromosomal Locations for CCDS 49907.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 16 (NC_000082.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 90938240 90939034 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 90944355 90944575 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 90944799 90944907 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 90946792 90946862 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 90947015 90947053 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 90948066 90948113 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 90949699 90949737 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 90950351 90950485 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 90951800 90952009 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 90955309 90955471 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 90957594 90957672 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 90960244 90960459 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 90960560 90960677 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 90961374 90961530 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 90963818 90963976 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 90964213 90964405 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 90964505 90964645 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 90967300 90967384 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 90969183 90969374 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 90971564 90971587 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 90973910 90974066 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 90976599 90976751 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 90978689 90978770 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 90979751 90979920 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 90980949 90981045 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 90981808 90981869 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 90987340 90987423 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 90988142 90988367 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 90991380 90991647 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 90993941 90994027 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 91010024 91010169 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 91011093 91011190 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (4824 nt):
ATGCGGAAGAGCTGGACCTGCTGGAGCGGAAGTGACGCTTCGGGCGGCTGTAGCGGCGGAGGCTGCGGGA
GAAGGAGGAGGAGGAGCCGGAGGAAGAGGGCTGCCTCTGAAGAAAGGAGAATGGCGTTCAGCAAAGGATT
TCGAATCTACCACAAATTGGATCCCCCACCGTTCAGCCTCATAGTGGAAACTAGGCATAAGGAAGAATGT
CTCATGTTCGAGTCTGGGGCTGTGGCTGTGCTCTCATCTGCAGAAAAGGAGGCTATTAAAGGCACATATG
CCAAAGTACTGGATGCATACGGACTTTTGGGAGTTTTACGATTAAATCTTGGTGATACCATGCTGCACTA
TCTGGTCCTAGTCACTGGATGCATGTCTGTGGGGAAAATCCAAGAATCTGAAGTTTTCCGAGTTACTTCC
ACTGAGTTTATATCATTGCGAGTTGATGCTTCAGATGAGGACCGCATTTCGGAAGTACGAAAAGTTTTGA
ACTCGGGAAACTTTTATTTTGCATGGTCTGCATCTGGAGTCAGCTTAGATCTGAGTCTGAATGCACATCG
AAGCATGCAAGAGCACACAACCGACAATAGGTTTTTCTGGAATCAGTCTCTGCATTTGCATCTCAAGCAC
TATGGTGTGAACTGCGATGACTGGTTATTACGGCTCATGTGTGGGGGAGTAGAGATTAGAACCATTTATG
CTGCCCATAAACAGGCAAAAGCTTGCCTCATCTCAAGACTAAGCTGTGAACGAGCTGGGACAAGGTTCAA
TGTCCGGGGAACCAACGATGATGGTCATGTTGCCAACTTTGTAGAGACAGAGCAGGTTATATACTTAGAT
GACTGTGTCTCTTCCTTCATACAAATCCGAGGATCTGTTCCATTGTTCTGGGAGCAACCAGGGTTGCAAG
TGGGATCCCATCGTGTTCGTATGTCAAGGGGATTTGAAGCCAATGCGCCTGCCTTTGACAGGCATTTCCG
AACACTTAAGGACTTATATGGTAAACAGATAGTAGTGAATCTGCTTGGGTCTAAGGAAGGCGAGCATATG
CTGAGCAAGGCTTTCCAGAGTCATTTAAAAGCCTCTGAACACGCTTCTGATATCCACATGGTGTCTTTTG
ACTATCATCAAATGGTTAAAGGAGGAAAGGCAGAAAAACTACACAGTATTCTCAAACCACAAGTCCAGAA
GTTTCTAGATTATGGATTTTTTTATTTCGATGGCAGTGAAGTTCAAAGGTGCCAGAGTGGTACAGTTCGA
ACAAACTGCTTGGATTGTCTGGATAGAACAAATAGTGTGCAGGCATTCCTTGGCTTAGAGATGCTCGCTA
AGCAGCTGGAAGCTCTGGGCTTGGCTGAGAAGCCTCAGCTGGTGACCCGCTTCCAAGAAGTTTTCCGGTC
CATGTGGTCTGTGAATGGCGACTCAATCAGTAAAATATATGCAGGCACCGGGGCCCTGGAAGGGAAGGCC
AAGTTAAAAGATGGTGCGCGATCTGTCACCAGAACCATCCAGAATAACTTCTTCGACAGCTCCAAGCAGG
AAGCCATTGATGTCCTGCTCCTGGGAAATACTCTCAACAGCGATTTAGCTGACAAAGCCCGAGCGCTTCT
AACTACTGGAAGTTTGCGTGTTTCTGAACAGACATTACAGTCAGCATCTTCCAAAGTCTTAAAGAACATG
TGTGAGAACTTCTACAAATACTCAAAGCCCAAGAAGATCCGAGTGTGTGTTGGCACCTGGAATGTGAACG
GCGGGAAGCAGTTCCGCAGCATAGCGTTCAAGAACCAGACGCTCACAGACTGGCTTCTGGACGCTCCCAA
GTTAGCCGGCATCCAGGAGTTTCAAGATAAGAGAAGTAAGCCAACTGATATATTTGCAATTGGCTTTGAA
GAAATGGTGGAGCTGAATGCTGGGAACATTGTGAATGCAAGCACAACCAACCAGAAGCTGTGGGCAGTGG
AGCTGCAGAAGACCATCTCCAGGGACAACAAGTATGTCCTGCTGGCCTCGGAGCAGCTGGTGGGTGTCTG
CCTGTTTGTCTTTATCAGACCACAGCACGCTCCTTTTATCAGGGATGTTGCAGTTGATACTGTGAAAACT
GGCATGGGAGGTGCAACTGGAAACAAGGGCGCCGTTGCAATTCGGATGCTCTTCCACACCACCAGCCTTT
GCTTCGTCTGCAGCCACTTTGCTGCAGGGCAGTCCCAAGTCAAAGAGAGAAATGAAGATTTTGTAGAAAT
AGCACGAAAACTGAGTTTCCCCATGGGACGAATGCTCTTCTCCCATGACTATGTATTTTGGTGTGGTGAT
TTCAACTATCGAATTGACCTTCCGAATGAAGAGGTTAAAGAGCTCATAAGACAACAAAACTGGGATTCTC
TGATCGCTGGGGATCAGCTCATCAACCAGAAAAATGCAGGACAGATCTTTAGAGGATTCTTAGAGGGAAA
AGTAACGTTTGCTCCAACCTATAAATATGACTTGTTTTCTGAAGACTATGACACCAGTGAGAAGTGTCGC
ACCCCTGCTTGGACAGACCGTGTCCTCTGGAGAAGGAGGAAGTGGCCTTTTGACAGATCAGCTGAAGATT
TAGATCTCCTGAATGCTAGTTTCCAAGATGAAAGTAAAATTCTTTATACATGGACCCCTGGCACCTTGCT
GCACTATGGAAGAGCCGAGCTGAAGACTTCTGACCATAGGCCCGTCGTTGCCTTGATTGACATAGATATA
TTTGAAGTTGAAGCTGAAGAGAGACAAAAAATTTATAAAGAAGTTATTGCCGTCCAGGGCCCACCAGATG
GCACAGTGCTGGTCTCAATCAAAAGTTCTGCACAAGAAAGTACTTTTTTTGATGATGCTTTGATTGATGA
GCTTCTGCGGCAGTTTGCACACTTTGGTGAAGTTATACTCATAAGATTTGTAGAAGATAAAATGTGGGTT
ACATTTTTGGAGGGAAGCTCTGCCTTGAATGCTCTGAGCCTAAATGGGAAAGAGCTATTAAATCGGACTA
TAACAATTACTTTAAAAAGTCCAGACTGGATCAAACATTTGGAAGAAGAGATGAGTTTAGAGAAAATCAG
TGTCACGTTGCCCTCATCAGCAAGCTCCACCCTGCTTGGTGAAGACGCAGAGGTCGCAGCAGACTTTGAC
ATGGAAGGTGACGTCGATGACTACAGCGCTGAAGTAGAGGAGCTTCTTCCTCAGCATCTGCAGCCGTCCT
CAAGTTCTGGCCTGGGCACTTCTCCAAGTTCTTCACCCCGGACCAGTCCCTGCCAGTCCCCCACAGTACC
AGAGTACTCCGCCCCTTCTCTTCCCATCAGACCTAGCCGAGCACCGTCAAGAACTCCAGGACCTCCAAGT
TCGCAGGGCTCTCCAGTTGACACTCAGCCAGCGGCCCAGAAGGATTCTTCCCAGACTCTAGAGCCCAAGA
GACCACCCCCTCCCCGCCCAGTCGCTCCTCCGGCACGTCCTGCCCCACCACAGAGACCACCTCCACCTTC
AGGGGCTAGGAGTCCTGCGCCTGCTAGAAAAGAATTTGGAGGTGTTGGAGCCCCTCCCAGTCCCGGGGTT
GCTAGGAGAGAGATAGAAGCACCCAAAAGCCCTGGAACAGCACGGAAAGATAATATAGGGCGTAATCAGC
CTTCCCCTCAAGCCGGACTTGCAGGCCCAGGACCCGCTGGATACGGTGCGGCTAGACCGACAATTCCAGC
TCGTGCTGGAGTGATCAGCGCCCCTCAGAGCCAGGCTCGGGTATGTGCTGGAAGGCCGACTCCTGACAGC
CAAAGCAAGCCCTCGGAGACATTGAAAGGTCCTGCTGTCCTTCCAGAACCACTGAAGCCTCAGGCTGCAT
TTCCTCAGCAGCCTTCTCTGCCCACACCTGCTCAAAAGTTACAGGACCCGCTTGTCCCCATAGCAGCACC
TACTATGCCTCCCTCTGGCCCCCAACCAAATTTGGAAACCCCCCCACAGCCCCCACCTCGGAGCAGGTCA
TCTCAAAGCTTGCCTTCAGACTCCTCACCACAGCTGCAGGTAAAAATAAATGGCATTTCTGGTGTCAAAC
AAGAGCCAACATTGAAGAGTGACCCATTTGAAGATCTCTCACTTAGTGTGCTTGCTGTATCAAAGGCTCA
GCCTTCTGTTCAGATTTCACCTGTTCTAACCCCAGACCCAAAGATGTTGATTCAGTTGCCTTCTGCATCG
CAAAGTCAAGTTAACCCTTTGAGTTCTGTAAGTTGCATGCCAACCAGGCCTCCAGGTCCAGAGGAAAGCA
AGTCACAGGAGAGTATGGGCAGTTCTGCAAACCCGTTTCCCAGCCTGCCCTGCCGGAACCCTTTTACAGA
CAGGACTGCTGCCCCTGGAAACCCATTTAGAGTTCAGTCCCAAGAATCAGAGGCAACTTCTTGGCTCTCC
AAAGAAGAGCCTGTTCCCAACAGTCCCTTCCCTCCTCTCATGCCTCTCAGTCATGACACGAGCAAGGCTT
CAAGTTCGCTTGGTGGCTTTGAGGACAATTTTGATCTGCAGAGCCAGTCTACAGTAAAAACAAGCAACCC
CAAAGGATGGGTAACCTTTGACGAAGACGACAACTTTCCTACAACAGGAAAGTCAAAGTCAGTTTGTCCA
GACTTAGTGGGTAACGCGCCAGCTTCATTTGATGATGACTGGAGTAAAGGTGCGAGCGTTTCTTTCTGTG
TGTTGCCAGCCAGAAGGCCACCACCACCACCACCTCCTGTCCCTCTGCTACCACCTGGCACAACCTCATC
TGCAGGACCTAGCACAACCCTGCCATCTAAGGCACCTTCCACATTGGACTTCACGGAAAGATAA

Translation (1607 aa):
MRKSWTCWSGSDASGGCSGGGCGRRRRRSRRKRAASEERRMAFSKGFRIYHKLDPPPFSLIVETRHKEEC
LMFESGAVAVLSSAEKEAIKGTYAKVLDAYGLLGVLRLNLGDTMLHYLVLVTGCMSVGKIQESEVFRVTS
TEFISLRVDASDEDRISEVRKVLNSGNFYFAWSASGVSLDLSLNAHRSMQEHTTDNRFFWNQSLHLHLKH
YGVNCDDWLLRLMCGGVEIRTIYAAHKQAKACLISRLSCERAGTRFNVRGTNDDGHVANFVETEQVIYLD
DCVSSFIQIRGSVPLFWEQPGLQVGSHRVRMSRGFEANAPAFDRHFRTLKDLYGKQIVVNLLGSKEGEHM
LSKAFQSHLKASEHASDIHMVSFDYHQMVKGGKAEKLHSILKPQVQKFLDYGFFYFDGSEVQRCQSGTVR
TNCLDCLDRTNSVQAFLGLEMLAKQLEALGLAEKPQLVTRFQEVFRSMWSVNGDSISKIYAGTGALEGKA
KLKDGARSVTRTIQNNFFDSSKQEAIDVLLLGNTLNSDLADKARALLTTGSLRVSEQTLQSASSKVLKNM
CENFYKYSKPKKIRVCVGTWNVNGGKQFRSIAFKNQTLTDWLLDAPKLAGIQEFQDKRSKPTDIFAIGFE
EMVELNAGNIVNASTTNQKLWAVELQKTISRDNKYVLLASEQLVGVCLFVFIRPQHAPFIRDVAVDTVKT
GMGGATGNKGAVAIRMLFHTTSLCFVCSHFAAGQSQVKERNEDFVEIARKLSFPMGRMLFSHDYVFWCGD
FNYRIDLPNEEVKELIRQQNWDSLIAGDQLINQKNAGQIFRGFLEGKVTFAPTYKYDLFSEDYDTSEKCR
TPAWTDRVLWRRRKWPFDRSAEDLDLLNASFQDESKILYTWTPGTLLHYGRAELKTSDHRPVVALIDIDI
FEVEAEERQKIYKEVIAVQGPPDGTVLVSIKSSAQESTFFDDALIDELLRQFAHFGEVILIRFVEDKMWV
TFLEGSSALNALSLNGKELLNRTITITLKSPDWIKHLEEEMSLEKISVTLPSSASSTLLGEDAEVAADFD
MEGDVDDYSAEVEELLPQHLQPSSSSGLGTSPSSSPRTSPCQSPTVPEYSAPSLPIRPSRAPSRTPGPPS
SQGSPVDTQPAAQKDSSQTLEPKRPPPPRPVAPPARPAPPQRPPPPSGARSPAPARKEFGGVGAPPSPGV
ARREIEAPKSPGTARKDNIGRNQPSPQAGLAGPGPAGYGAARPTIPARAGVISAPQSQARVCAGRPTPDS
QSKPSETLKGPAVLPEPLKPQAAFPQQPSLPTPAQKLQDPLVPIAAPTMPPSGPQPNLETPPQPPPRSRS
SQSLPSDSSPQLQVKINGISGVKQEPTLKSDPFEDLSLSVLAVSKAQPSVQISPVLTPDPKMLIQLPSAS
QSQVNPLSSVSCMPTRPPGPEESKSQESMGSSANPFPSLPCRNPFTDRTAAPGNPFRVQSQESEATSWLS
KEEPVPNSPFPPLMPLSHDTSKASSSLGGFEDNFDLQSQSTVKTSNPKGWVTFDEDDNFPTTGKSKSVCP
DLVGNAPASFDDDWSKGASVSFCVLPARRPPPPPPPVPLLPPGTTSSAGPSTTLPSKAPSTLDFTER


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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