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Report for CCDS50029.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
50029.1 Public Mus musculus 17 Mapk8ip3 23 108 98 CCDS HistoryNCBI Gene:30957Re-query CCDS DB by CCDS ID:50029.1Re-query CCDS DB by GeneID:30957See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 50029.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000117509.7 ENSMUSP00000112712.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000117509.7Link to Ensembl Protein Viewer:ENSMUSP00000112712.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000117509Re-query CCDS DB by Protein ID:ENSMUSP00000112712
Original member Current member NCBI NM_001163449.1 NP_001156921.1 Accepted alive Link to Nucleotide Sequence:NM_001163449.1Link to Protein Sequence:NP_001156921.1Re-query CCDS DB by Nucleotide ID:NM_001163449Re-query CCDS DB by Protein ID:NP_001156921Link to BLAST:NP_001156921.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001156921.1 1314 Q9ESN9-3 1314 100% 0 0

Chromosomal Locations for CCDS 50029.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 17 (NC_000083.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 24898948 24899069 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 24899145 24899294 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 24899396 24899575 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 24899675 24899713 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 24899836 24899949 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 24900162 24900333 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 24900498 24900646 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 24900788 24900855 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 24900939 24901019 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 24901106 24901225 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 24901340 24901529 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 24901605 24901787 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 24902278 24902443 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 24903004 24903162 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 24903289 24903384 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 24903925 24904051 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 24904649 24904819 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 24904907 24904963 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 24905168 24905298 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 24906147 24906228 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 24906809 24906961 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 24907329 24907386 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 24908411 24908428 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 24909150 24909161 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 24912748 24912866 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 24913530 24913632 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 24914459 24914705 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 24918088 24918139 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 24920472 24920495 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 24923816 24923907 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 24924147 24924217 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 24927829 24927949 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 24936537 24936854 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3945 nt):
ATGATGGAGATCCAGATGGACGAGGGAGGAGGAGTGGTGGTGTACCAAGACGACTACTGCTCGGGCTCGG
TCATGTCGGAGCGTGTGTCGGGCCTGGCGGGCTCCATCTACCGCGAGTTCGAGCGCCTCATTCACTGCTA
TGACGAGGAGGTGGTCAAGGAGCTCATGCCGCTGGTGGTGAACGTGCTGGAGAACCTTGACTCGGTGCTG
AGCGAGAACCAGGAGCACGAGGTGGAGCTGGAGCTCCTACGCGAGGACAACGAGCAGCTGCTCACGCAAT
ACGAGCGCGAGAAGGCGCTGCGCAAACAGGCCGAGGAGAAATTCATCGAATTTGAAGATGCCTTGGAACA
AGAGAAGAAAGAACTCCAGATCCAGGTAGAACATTATGAGTTTCAGACACGCCAGCTGGAGCTAAAGGCC
AAAAACTATGCAGATCAGATTTCCCGACTGGAGGAACGAGAATCGGAGATGAAGAAGGAATACAATGCCC
TGCACCAGCGGCACACAGAGATGATCCAGACCTATGTGGAACACATTGAAAGATCCAAGATGCAGCAAGT
TGGGGGTAGCGGCCAAACAGAAAGCAGCCTGCCCGGGCGGAGTCCTCGCCAGTCGTGGAGGAAAAGCAGG
AAGGAGCGTCCCACCTCTCTGAATGTCTTCCCCCTGGCTGATGGCATGTGTCCAAATGATGAGATGTCTG
AGTCAGGCCAGTCCTCAGCAGCTGCAACACCCAGTACCACAGGTACCAAGTCCAACACACCCACGTCCTC
CGTGCCCTCAGCAGCAGTCACGCCACTCAACGAGAGCCTACAGCCCCTGGGGGACTATGTCAGTGTCACA
AAGAACAACAAGCAGGCCCGAGAGAAGCGCAATAGCCGTAACATGGAGGTCCAGGTCACCCAAGAGATGC
GGAACGTCAGTATCGGCATGGGCAGCAGTGACGAGTGGTCCGATGTTCAGGACATTATCGACTCCACCCC
AGAGCTGGATGTGTGTCCTGAAACCCGTCTGGAGCGCACAGGAAGCAGCCCAACCCAGGGAATTGTAAAC
AAAGCTTTTGGAATCAACACTGACTCCTTGTATCACGAACTCTCCACGGCGGGATCTGAGGTCATCGGGG
ATGTGGACGAGGGAGCTGATCTCCTAGGGGAGTTTTCAGTGCGCGATGATTTTTTTGGAATGGGCAAAGA
AGTGGGGAACCTGCTGCTGGAGAACTCACAGCTTCTAGAGACAAAAAATGCTTTAAATGTAGTGAAGAAT
GACCTCATTGCTAAGGTTGACCAACTGTCAGGAGAACAGGAGGTCCTGAAGGGTGAGCTGGAAGCAGCCA
AGCAAGCCAAAGTCAAGCTGGAGAACCGAATCAAAGAGCTTGAAGAAGAACTGAAGAGAGTCAAGTCAGA
GGCAGTAACTGCCCGCCGTGAGCCCAGAGAAGAGGTGGAGGATGTAAGCAGCTATCTCTGTACAGAATTG
GACAAAATCCCCATGGCCCAGCGCCGACGCTTCACACGGGTGGAGATGGCCCGAGTGCTCATGGAACGCA
ACCAGTACAAGGAACGCCTCATGGAGCTGCAGGAGGCTGTGAGGTGGACTGAAATGATCAGAGCATCAAG
GGAACACCCATCTGTCCAGGAGAAGAAGAAGTCCACCATCTGGCAGTTCTTTAGTCGCCTCTTCAGCTCC
TCATCTAGCCCCCCTCCGGCCAAACGATCCTACCCATCTGTGAACATTCACTACAAGTCACCCACTGCAG
CTGGCTTTAGCCAGCGTCGCAGCCATGCTTTGTGCCAGATCTCAGCCGGCAGCAGGCCCCTGGAGTTCTT
CCCTGATGATGACTGCACCTCTTCTGCCCGGCGGGAGCAGAAGCGGGAGCAGTACCGCCAGGTTCGTGAA
CACGTGCGCAATGATGACGGGAGGCTGCAGGCCTGTGGGTGGAGCCTGCCTGCCAAGTACAAGCAGCTGA
GCCCCAATGGAGGCCAGGAAGACACCCGGATGAAAAATGTGCCTGTCCCTGTGTACTGCCGCCCTCTGGT
GGAGAAGGACCCTTCGACAAAGCTGTGGTGTGCTGCTGGTGTCAACCTGAGTGGGTGGAAGCCACATGAA
GAGGACTCTAGCAATGGACCCAAGCCTGTACCAGGTCGAGACCCTCTGACCTGTGACCGGGAAGGAGAAG
GCGAACCCAAGAGCACACACCCATCACCTGAGAAGAAGAAGGCAAAGGAAACCCCTGAGGCAGATGCTAC
CTCCAGTCGGGTATGGATCCTCACCAGCACCCTGACAACCAGCAAGGTGGTGATCATTGATGCCAACCAG
CCAGGCACAATTGTGGATCAGTTCACAGTCTGCAATGCCCACGTCCTGTGTATCTCCAGCATTCCTGCGG
CCAGTGACAGTGACTATCCCCCTGGGGAGATGTTCCTAGACAGTGATGTGAACCCTGAAGATTCAGGTGC
TGATGGTGTGCTGGCTGGCATCACCCTGGTGGGGTGTGCTACCCGCTGCAATGTTCCACGTAGCAACTGT
TCCTCACGAGGAGACACCCCAGTACTGGACAAGGGGCAGGGGGATGTGGCGACCACTGCCAATGGGAAGG
TCAACCCGTCCCAATCCACAGAAGAAGCCACAGAAGCCACGGAGGTGCCAGACCCTGGTCCCAGCGAGTC
AGAAGCAACGACAGTCCGGCCCGGGCCTCTCACAGAGCATGTCTTTACTGACCCAGCACCCACCCCATCC
TCCAGCACCCAGCCTGCCAGTGAGAATGGGTCAGAGTCCAATGGCACCATTGTACAGCCTCAGGTGGAGC
CCAGTGGGGAACTCTCAACAACAACCAGTAGCGCTGCACCCACTATGTGGCTAGGAGCCCAGAATGGCTG
GCTCTATGTGCATTCAGCGGTAGCCAACTGGAAGAAGTGTCTGCACTCCATCAAGCTAAAAGACTCTGTG
CTGAGCCTGGTGCATGTCAAAGGCCGAGTGCTGGTAGCTCTTGCAGATGGGACCCTGGCTATCTTCCATC
GTGGAGAGGATGGCCAGTGGGACCTGAGCAACTACCACCTAATGGACCTGGGCCACCCACACCACTCCAT
CCGCTGCATGGCTGTTGTGAATGACCGAGTTTGGTGTGGCTACAAGAACAAGGTGCATGTTATCCAGCCC
AAGACAATGCAGATTGAGAAATCATTTGATGCCCACCCAAGGCGGGAAAGCCAGGTACGTCAGCTGGCCT
GGATCGGTGATGGAGTGTGGGTCTCTATTCGCTTGGATTCTACCCTTCGGCTCTACCATGCTCACACCCA
CCAGCACCTGCAGGATGTGGACATTGAGCCCTATGTTAGCAAGATGCTAGGAACCGGCAAGCTGGGCTTC
TCCTTCGTGCGCATCACAGCCTTACTCATTGCAGGCAACCGTCTGTGGGTGGGCACTGGCAATGGGGTTG
TCATCTCCATCCCCTTGACTGAGACTGTGGTCCTGCATCGAGGCCAGCTCCTAGGGCTCCGAGCCAACAA
GACATCCCCAACATCTGGGGAGGGGACCCGCCCAGGGGGCATCATCCATGTGTATGGGGACGACAGCAGT
GACAAGGCCGCCAGTAGTTTCATCCCCTACTGCTCCATGGCACAGGCTCAGCTTTGCTTCCATGGGCACC
GTGATGCTGTCAAATTCTTTGTCTCTGTGCCAGGAAATGTGCTGGCCACTCTCAATGGCAGTGTGCTAGA
CAGCCCATCAGAGGGCCCTGGGCCTGCTGCACCCGCTGCAGATGCTGAGGGCCAGAAGTTGAAGAATGCA
CTGGTGCTGAGTGGTGGTGAAGGTTACATTGACTTCCGTATCGGAGACGGAGAGGATGATGAAACTGAGG
AATGTGCCGGGGACGTGAACCAGACAAAGCCCTCGTTGTCCAAGGCTGAGCGCAGCCACATCATCGTGTG
GCAGGTGTCCTACACCCCTGAGTGA

Translation (1314 aa):
MMEIQMDEGGGVVVYQDDYCSGSVMSERVSGLAGSIYREFERLIHCYDEEVVKELMPLVVNVLENLDSVL
SENQEHEVELELLREDNEQLLTQYEREKALRKQAEEKFIEFEDALEQEKKELQIQVEHYEFQTRQLELKA
KNYADQISRLEERESEMKKEYNALHQRHTEMIQTYVEHIERSKMQQVGGSGQTESSLPGRSPRQSWRKSR
KERPTSLNVFPLADGMCPNDEMSESGQSSAAATPSTTGTKSNTPTSSVPSAAVTPLNESLQPLGDYVSVT
KNNKQAREKRNSRNMEVQVTQEMRNVSIGMGSSDEWSDVQDIIDSTPELDVCPETRLERTGSSPTQGIVN
KAFGINTDSLYHELSTAGSEVIGDVDEGADLLGEFSVRDDFFGMGKEVGNLLLENSQLLETKNALNVVKN
DLIAKVDQLSGEQEVLKGELEAAKQAKVKLENRIKELEEELKRVKSEAVTARREPREEVEDVSSYLCTEL
DKIPMAQRRRFTRVEMARVLMERNQYKERLMELQEAVRWTEMIRASREHPSVQEKKKSTIWQFFSRLFSS
SSSPPPAKRSYPSVNIHYKSPTAAGFSQRRSHALCQISAGSRPLEFFPDDDCTSSARREQKREQYRQVRE
HVRNDDGRLQACGWSLPAKYKQLSPNGGQEDTRMKNVPVPVYCRPLVEKDPSTKLWCAAGVNLSGWKPHE
EDSSNGPKPVPGRDPLTCDREGEGEPKSTHPSPEKKKAKETPEADATSSRVWILTSTLTTSKVVIIDANQ
PGTIVDQFTVCNAHVLCISSIPAASDSDYPPGEMFLDSDVNPEDSGADGVLAGITLVGCATRCNVPRSNC
SSRGDTPVLDKGQGDVATTANGKVNPSQSTEEATEATEVPDPGPSESEATTVRPGPLTEHVFTDPAPTPS
SSTQPASENGSESNGTIVQPQVEPSGELSTTTSSAAPTMWLGAQNGWLYVHSAVANWKKCLHSIKLKDSV
LSLVHVKGRVLVALADGTLAIFHRGEDGQWDLSNYHLMDLGHPHHSIRCMAVVNDRVWCGYKNKVHVIQP
KTMQIEKSFDAHPRRESQVRQLAWIGDGVWVSIRLDSTLRLYHAHTHQHLQDVDIEPYVSKMLGTGKLGF
SFVRITALLIAGNRLWVGTGNGVVISIPLTETVVLHRGQLLGLRANKTSPTSGEGTRPGGIIHVYGDDSS
DKAASSFIPYCSMAQAQLCFHGHRDAVKFFVSVPGNVLATLNGSVLDSPSEGPGPAAPAADAEGQKLKNA
LVLSGGEGYIDFRIGDGEDDETEECAGDVNQTKPSLSKAERSHIIVWQVSYTPE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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