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Report for CCDS50135.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
50135.1 Public Mus musculus 17 Foxp4 23 108 98 CCDS HistoryNCBI Gene:74123Re-query CCDS DB by CCDS ID:50135.1Re-query CCDS DB by GeneID:74123See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 50135.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000113265.7 ENSMUSP00000108890.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000113265.7Link to Ensembl Protein Viewer:ENSMUSP00000108890.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000113265Re-query CCDS DB by Protein ID:ENSMUSP00000108890
Original member NCBI NM_028767.2 NP_083043.2 Updated not alive Link to Nucleotide Sequence:NM_028767.2Link to Protein Sequence:NP_083043.2Re-query CCDS DB by Nucleotide ID:NM_028767Re-query CCDS DB by Protein ID:NP_083043
Current member NCBI NM_028767.3 NP_083043.2 Accepted alive Link to Nucleotide Sequence:NM_028767.3Link to Protein Sequence:NP_083043.2Re-query CCDS DB by Nucleotide ID:NM_028767Re-query CCDS DB by Protein ID:NP_083043Link to BLAST:NP_083043.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_083043.2 672 Q9DBY0-2 672 100% 0 0

Chromosomal Locations for CCDS 50135.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 17 (NC_000083.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 47868656 47868803 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 47869104 47869273 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 47869725 47869791 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 47871230 47871351 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 47874635 47874736 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 47875355 47875431 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 47875520 47875688 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 47875840 47875923 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 47877141 47877228 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 47877928 47878032 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 47878284 47878494 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 47878607 47878754 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 47880263 47880349 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 47880770 47880892 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 47888125 47888220 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 47904296 47904517 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2019 nt):
ATGATGGTGGAGTCTGCATCGGAGACAATCAGGTCGGCTCCGTCTGGTCAGAACGGCGTGGGCAGCCTCT
CTGCGCAGGCTGATGGCGGCGGTGGGGCCGGGACCGCGGGCACGGCCCCGGCTGCCGGTAGGGATGCCTC
AGGCAGGGAAGCAGCCAGCGGAGGAGCCGACAGCAATGGCGAGATGAGCCCCGCGGAGCTTCTGCACTTC
CAACAGCAACAGGCTCTCCAGGTGGCCCGGCAGTTCCTGTTGCAGCAAGCCTCCAGCCTGAACTCCCCGG
GGAACAATGACAGTAAACAGTCGGCCTCTGCGGTGCAGGTGCCTGTGTCTGTGGCCATGATGTCCCAGCA
GATGCTTACCCCCCAGCAGATGCAGCAGATCCTGTCGCCACCTCAGCTGCAGGCCTTGCTGCAGCAGCAA
CAGGCTCTCATGCTCCAGCAGCTGCAGGAGTATTACAAGAAGCAGCAAGAGCAGCTCCACCTGCAGCTCC
TCACCCAGCAGCAGGCTGGAAAACAGCAGCCCAAAGAGGCCCTGGGGAACAAGCAGCTGGCCTTCCAGCA
GCAGCTCCTGCAGATGCAACAGTTGCAGCAACAGCACTTGCTCAACCTCCAGAGGCAGGGGCTGGTCAGC
CTGCAGCCAAGCCAAGCCTCAGGGCCCCTCCAGGCCCTCCCGCAAGCCGTGTGCCCGACAGACCTGCCCC
AGCTGTGGAAAGGCGAGGGTGCCCCGGGGCAGCCCGCTGAGGACAGCGGCAGGCAGGAGGGGCTGGACCT
CGCCAGCACAGCTGTTACTGCTACCTCGTTTGCCAGCCCTCCCAAGGTCTCCCCGCCCCTCTCCCACCAC
CCCTTACCCAACGGACAACCCACTGTGCTCACATCTCGGAGAGACAGCTCCTCCCATGAGGAGACCCCCA
GTTCCCACCCTCTTTATGGACATGGGGAGTGCAAGTGGCCAGGCTGTGAGACCCTGTGTGAAGACCTGGG
CCAGTTTATCAAACACCTCAACACAGAACACGCTTTGGATGACCGGAGCACGGCCCAATGCCGCGTGCAG
ATGCAGGTGGTCCAACAGCTGGAGATCCAGCTGGCCAAGGAGAGTGAGCGGCTGCAGGCCATGATGGCAC
ATCTGCACATGCGGCCTTCAGAGCCCAAGCCCTTCAGCCAGCCAGTGACCGTCTCCGCAGACCCGTTCCC
GGATGGCCTCGTGCACCCCCCAACTTCAGCCGCTGCCCCCGTCACACCCCTGCGTCCCCCTGGCCTGGGC
TCTGCCTCTTTGCACAGTGGGGGCCCTGCCCGCAGGAGAAGTAATGACAAATTCTGCTCCCCCATCTCCT
CAGAGCTTGCCCAGAATCATGAGTTCTACAAGAACGCTGACGTCAGGCCCCCCTTCACCTACGCTTCCCT
TATCCGCCAGGCCATTCTGGAAACTCCAGATCGGCAGCTGACGCTAAATGAGATTTATAACTGGTTCACC
AGGATGTTCGCCTACTTCCGAAGAAACACGGCCACCTGGAAGAATGCCGTGCGCCACAACCTCAGCCTGC
ACAAGTGTTTCGTCCGTGTGGAGAACGTCAAGGGGGCCGTGTGGACTGTGGATGAGCGGGAATATCAGAA
ACGGAGACCGCCAAAGATGACAGGGAGTCCCACTCTGGTGAAGAACATGATCTCGGGCCTCAGTTACGGG
GCACTTAACGCCAGCTACCAGGCTGCCCTGGCAGAGAGCAGCTTCCCTCTTCTCAGCAACCCCGGCATGC
TGAACCCTGGCTCAGCCAGCAGCCTTCTGCCCCTCAGCCAGGAGGACCTGGGTGTCCCTGGGGAACCACT
ACCCAGCAATGGGAGCAGCAGCCCGCCTCGTCTTTCCCCTCCTCAGTACAGCCACCAGATACAAGTCAAA
GAGGAGCCTGCAGAGGCAGAGGAAGACCGACGGCCGGGGCCTCCCTTGGGCGCCCCCAACCCCAGCACTG
TGGGGCCTCCAGAAGACAGGGACCTGGAGGAGGACCTGGGAGGAGAGGACATGTCCTAA

Translation (672 aa):
MMVESASETIRSAPSGQNGVGSLSAQADGGGGAGTAGTAPAAGRDASGREAASGGADSNGEMSPAELLHF
QQQQALQVARQFLLQQASSLNSPGNNDSKQSASAVQVPVSVAMMSQQMLTPQQMQQILSPPQLQALLQQQ
QALMLQQLQEYYKKQQEQLHLQLLTQQQAGKQQPKEALGNKQLAFQQQLLQMQQLQQQHLLNLQRQGLVS
LQPSQASGPLQALPQAVCPTDLPQLWKGEGAPGQPAEDSGRQEGLDLASTAVTATSFASPPKVSPPLSHH
PLPNGQPTVLTSRRDSSSHEETPSSHPLYGHGECKWPGCETLCEDLGQFIKHLNTEHALDDRSTAQCRVQ
MQVVQQLEIQLAKESERLQAMMAHLHMRPSEPKPFSQPVTVSADPFPDGLVHPPTSAAAPVTPLRPPGLG
SASLHSGGPARRRSNDKFCSPISSELAQNHEFYKNADVRPPFTYASLIRQAILETPDRQLTLNEIYNWFT
RMFAYFRRNTATWKNAVRHNLSLHKCFVRVENVKGAVWTVDEREYQKRRPPKMTGSPTLVKNMISGLSYG
ALNASYQAALAESSFPLLSNPGMLNPGSASSLLPLSQEDLGVPGEPLPSNGSSSPPRLSPPQYSHQIQVK
EEPAEAEEDRRPGPPLGAPNPSTVGPPEDRDLEEDLGGEDMS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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