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Report for CCDS50173.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
50173.1 Public Mus musculus 17 Dlgap1 23 108 98 CCDS HistoryNCBI Gene:224997Re-query CCDS DB by CCDS ID:50173.1Re-query CCDS DB by GeneID:224997See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 50173.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000097288.3 ENSMUSP00000094890.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000097288.3Link to Ensembl Protein Viewer:ENSMUSP00000094890.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000097288Re-query CCDS DB by Protein ID:ENSMUSP00000094890
Original member Current member NCBI NM_001128181.1 NP_001121653.1 Accepted alive Link to Nucleotide Sequence:NM_001128181.1Link to Protein Sequence:NP_001121653.1Re-query CCDS DB by Nucleotide ID:NM_001128181Re-query CCDS DB by Protein ID:NP_001121653Link to BLAST:NP_001121653.1

Chromosomal Locations for CCDS 50173.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 17 (NC_000083.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 70561821 70561871 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 70593167 70593381 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 70657454 70657631 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 70662569 70662809 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 70718196 70718225 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 70761075 70761445 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 70765998 70766089 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 70786788 70787209 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 70809188 70809279 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 70815194 70815412 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1911 nt):
ATGAACTTAATTTTCCATAAGGACATTCTGTTGGGTGTTTCGGCTAATAAGGTTCCCCAGGATGAATGGT
CA
GGGTACACACCTCGCGGGAAAGACGACGAGATCCCGTGCCGGAGGATGCGCAGTGGTAGCTACATCAA
A
GCCATGGGGGATGAAGACAGTGGGGACTCGGACACGAGCCCCAAGCCGTCTCCCAAGGTGGCTGCAAGA
AGA
GAAAGCTATCTCAAGGCCACGCAGCCGTCCCTTACAGAGCTCACCACTCTCAAGATCTCCAATGAAC
AC
TCCCCCAAACTCCAGATCCGGAGTCACAGCTACCTGAGGGCCGTAAGTGAAGTCTCCATCAACAGAAG
C
CTGGACAGCCTGGACCCTGCAGGCTTGCTCACGTCACCAAAGTTCCGCTCCAGAAACGAGAGCTACATG
CGC
GCCATGAGCACCATAAGTCAGGTGAGCGAGATGGAGGTGAACGGCCAGTTCGAATCCGTGTGCGAGT
CT
GTGTTCAGCGAGCTGGAGTCGCAGGCGGTGGAAGCGCTGGACCTGCCCCTGCCTGGCTGCTTCCGCAT
G
CGGAGCCACAGCTATGTGCGGGCCATCGAAAAGGGCTGCTCCCAGGACGACGAATGCGTGTCGCTGCGG
TCG
TCCTCCCCTCCACGCACAACCACCACCGTGAGGACCATCCAGAGCAGCACCGGTGTCATAAAACTGA
GT
TCTGCCGTTGAAGTGTCATCTTGCATTACAACATATAAGAAGACACCACCTCCAGTCCCACCCAGAAC
T
ACCACGAAACCTTTCATTTCTATCACAGCCCAGAGTAGCACAGAGTCTGCGCAGGATGCCTACATGGAC
GGG
CAAGGCCAGCGCGGAGACATGATCAGCCAGTCTGGCCTCAGCAACTCCACCGAAAGTCTGGACAGTA
TG
AAGGCTCTCACGGCTGCCATCGAGGCTGCAAACGCCCAGATTCACGGCCCAGCAAGTCAACATATGGG
C
AGCAATGCTGCTGCTGTCACCACCACCACCACCATAGCCACTGTCACCACCGAGGATAGGAAGAAAGAC
TTT
AAGAAAAACCGATGTCTGTCTATTGGGATACAGGTGGACGATGCCGAAGAGCCGGAGAAAATGGCAG
AG
AGTAAGACGTCCAATAAGTTCCAGTCCGTGGGAGTGCAAGTAGAAGAAGAGAAGTGCTTCCGCAGGTT
C
ACTCGGTCCAACAGTGTGACAACTGCAGTACAGGCCGACCTGGACTTCCATGATAATCTGGAAAATTCT
CTG
GAGTCTATAGAGGACAATTCGTGTCCTGGCCCCATGGCCAGACAGTTCTCGCGGGACGCCAGCACCT
CT
ACCGTCAGTATCCAGGGTTCAGGAAACCACTATCATGCCTGTGCAGCCGATGACGACTTTGACACGGA
T
TTTGACCCCTCTATCCTGCCTCCTCCGGACCCCTGGATTGACTCTATCACAGAAGACCCTCTGGAGGCC
GTT
CAAAGGTCCGTGTGCCACCGGGACGGCCACTGGTTCCTGAAGCTTCTCCAGGCAGAGCGGGACCGCA
TG
GAAGGGTGGTGCAAGCTAATGGAGAGAGAAGAGAGGGAGAACAACCTCCCAGAAGACATTCTAGGGAA
A
ATCCGAACCGCGGTGGGCAGTGCCCAACTTCTCATGGCGCAGAAATTCTACCAGTTCAGAGAACTGTGT
GAA
GAGAACCTGAATCCCAATGCTCACCCGAGACCCACTTCCCAGGACTTGGCGGGGTTTTGGGACATGC
TG
CAGTTGTCCATAGAGAATATTAGTATGAAATTTGATGAACTTCATCAGCTAAAGGCCAATAATTGGAA
A
CAGATGGATCCTCTTGACAAGAAGGTAGAACAATGTAGATTTTGTATGGTCCATTTAAAACCCTGCACA
AAC
GCTGGACAGTCTAAATAG


Translation (636 aa):
MNLIFHKDILLGVSANKVPQDEWSGYTPRGKDDEIPCRRMRSGSYIKAMGDEDSGDSDTSPKPSPKVAAR
R
ESYLKATQPSLTELTTL
KISNEHSPKLQIRSHSYLRAVSEVSINRSLDSLDPAGLLTSPKFRSRNESYM
R
AMSTISQ
VSEMEVNGQFESVCESVFSELESQAVEALDLPLPGCFRMRSHSYVRAIEKGCSQDDECVSLR
S
SSPPRTTTTVRTIQSST
GVIKLSSAVEVSSCITTYKKTPPPVPPRTTTKPFISITAQSSTESAQDAYMD
G
QGQRGDMISQSGLSNSTESLDSMKALTAAIEAANAQIHGPASQHMGSNAAAVTTTTTIATVTTEDRKKD
F
KKNRCLSIGIQ
VDDAEEPEKMAESKTSNKFQSVGVQVEEEKCFRRFTRSNSVTTAVQADLDFHDNLENS
L
ESIEDNSCPGPMARQFSRDASTSTVSIQGSGNHYHACAADDDFDTDFDPSILPPPDPWIDSITEDPLEA
V
QRSVCHRDGHWFLKLLQAERDRMEGWCKLMEREERENNLPED
ILGKIRTAVGSAQLLMAQKFYQFRELC
E
ENL
NPNAHPRPTSQDLAGFWDMLQLSIENISMKFDELHQLKANNWKQMDPLDKKVEQCRFCMVHLKPCT
N
AGQSK




Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser