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Report for CCDS50214.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
50214.1 Public Mus musculus 18 Crem 23 108 98 CCDS HistoryNCBI Gene:12916Re-query CCDS DB by CCDS ID:50214.1Re-query CCDS DB by GeneID:12916See the combined annotation on chromosome 18 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 50214.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000165086.7 ENSMUSP00000127353.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000165086.7Link to Ensembl Protein Viewer:ENSMUSP00000127353.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000165086Re-query CCDS DB by Protein ID:ENSMUSP00000127353
Original member Current member NCBI NM_001110856.2 NP_001104326.1 Accepted alive Link to Nucleotide Sequence:NM_001110856.2Link to Protein Sequence:NP_001104326.1Re-query CCDS DB by Nucleotide ID:NM_001110856Re-query CCDS DB by Protein ID:NP_001104326Link to BLAST:NP_001104326.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001104326.1 294 P27699-7 294 100% 0 0

Chromosomal Locations for CCDS 50214.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 18 (NC_000084.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18See the combined annotation on chromosome 18 in Sequence Viewer

Chromosome Start Stop Links
18 3267985 3268129 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 3273422 3273578 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 3276694 3276729 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 3295040 3295182 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 3295322 3295416 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 3299162 3299308 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 3325361 3325478 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 3327494 3327537 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (885 nt):
ATGAGCAAATGTGGCAGGAAAAAGTATATGAGGACAAATGTAAGGCAAATGACCATGGAAACAGTTGAAT
CA
CAGCAGGATCGAAGTGTAACACGTTCTGTGGCAGAGCATAGCTCTGCTCATATGCAGACTGGTCAAAT
T
TCTGTTCCTACTCTAGCTCAGGTTTCTGTAGCTGGATCAGGCACTGGAAGAGGCTCCCCAGCTGTGACT
CTA
GTACAGTTACCTTCAGGCCAAACTGTACAGGTCCAGGGAGTTATTCAGACACCACATCCATCGGTTA
TT
CAATCACCACAAATACAAACTGTTCAGGTAGCAACAATTGCAGAGACAGATGATTCTGCAGACTCAGA
A
GTAATTGATTCGCATAAACGTAGAGAAATTCTTTCACGAAGACCCTCATATAGAAAAATACTGAATGAA
CTT
TCCTCTGATGTGCCTGGTATTCCCAAGATTGAAGAAGAAAAATCAGAGGAAGAAGGGACACCACCTA
AC
ATTGCTACCATGGCAGTACCAACTAGCATATATCAGACTAGCACGGGGCAATACAATGAGGAGACTGA
C
CTTGCCCCAAGTCACATGGCTGCTGCCACAGGTGACATGCCAACTTACCAGATCCGAGCTCCTACTACT
GCT
TTGCCACAAGGTGTGGTGATGGCTGCCTCACCAGGAAGCCTGCACAGTCCCCAGCAACTAGCAGAAG
AA
GCAACTCGCAAGCGGGAGCTGAGGCTGATGAAAAACAGGGAAGCTGCCCGGGAGTGTCGCAGGAAGAA
G
AAAGAATATGTCAAATGTCTTGAAAATCGTGTGGCTGTGCTTGAAAATCAAAACAAGACCCTCATTGAG
GAA
CTCAAGGCCCTCAAAGACCTTTATTGCCATAAAGCAGAGTAA


Translation (294 aa):
MSKCGRKKYMRTNVRQMTMETVESQQDRSVTRSVAEHSSAHMQTGQISVPTLAQVSVAGSGTGRGSPAVT
L
VQLPSGQTVQVQGVIQTPHPSVIQSPQIQTVQ
VATIAETDDSADSEVIDSHKRREILSRRPSYRKILNE
L
SSDVPGIPKIEEEKSEEEGTPPNIATMAVPTSIYQTSTGQY
NEETDLAPSHMAAATGDMPTYQIRAPTT
A
LPQGVVMAASPGSLHSPQQLAEEATRKRELRLMKN
REAARECRRKKKEYVKCLENRVAVLENQNKTLIE
E
LKALKDLYCHKAE




Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser