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Report for CCDS50221.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
50221.1 Public Mus musculus 18 Ankrd29 23 108 98 CCDS HistoryNCBI Gene:225187Re-query CCDS DB by CCDS ID:50221.1Re-query CCDS DB by GeneID:225187See the combined annotation on chromosome 18 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 50221.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000118525.8 ENSMUSP00000114028.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000118525.8Link to Ensembl Protein Viewer:ENSMUSP00000114028.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000118525Re-query CCDS DB by Protein ID:ENSMUSP00000114028
Original member Current member NCBI NM_001190371.1 NP_001177300.1 Accepted alive Link to Nucleotide Sequence:NM_001190371.1Link to Protein Sequence:NP_001177300.1Re-query CCDS DB by Nucleotide ID:NM_001190371Re-query CCDS DB by Protein ID:NP_001177300Link to BLAST:NP_001177300.1

Chromosomal Locations for CCDS 50221.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 18 (NC_000084.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18See the combined annotation on chromosome 18 in Sequence Viewer

Chromosome Start Stop Links
18 12254594 12254701 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 12260934 12261032 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 12262112 12262207 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 12268450 12268548 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 12275706 12275804 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 12279690 12279788 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 12282303 12282401 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 12290717 12290815 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 12295879 12295989 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 12305611 12305631 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (930 nt):
ATGTGCAGGATGTCCTTCAAGAAGGAAACTCCGCTTGCCAATGCTGCATTCTGGGCAGCAAAGAGGGGAA
ACCTGGCCCTGCTGAAACTGCTATTAAACAGTGGCCGTGTGGACGTGGACTGCAGAGACAGTCACGGCAC
CACACTTCTCATGGTTGCCTCCTATGCTGGCCACATAGACTGTGTGAGGGAGCTTGTTCTGCAGGGAGCA
GACATCAACCTCCAGAGAGAGTCAGGTACAACTGCCCTGTTCTTCGCTGCCCAGCAAGGCCACAATGATG
TTGTGAGATTTCTCTTTGGATTTGGAGCATCCACTGAATGTCGGACCAAAGATGGGGGCACTGCCCTGTT
GGCTGCTAGTCAGTATGGGCACATGCCAGTGGTGGAGACCTTGCTGAAACATGGAGCCAACATCCATGAC
CAACTTTATGATGGAGCCACGGCCCTCTTTCTGGCTGCCCAAGGTGGCTACTTGGATGTCATCCGACTAC
TGCTGTCTTCAGGAGCAAAAGTCAACCAGCCAAGGCAGGATGGAACCGCGCCACTGTGGATCGCCTCCCA
GATGGGCCACAGCGAGGTGGTGCGCGTGATGCTGCTGCGGGGAGCTGACCGTGACGCTGCTCGCAACGAT
GGTACGACAGCATTGCTGAAAGCAGCCAACAAAGGGTATAACGATGTCATAGAGGAGCTGCTCAAATTCT
CACCTACTCTTGGTATTTTGAAGAATGGGACTTCGGCTCTCCATGCAGCAGTGCTCAGTGGGAATGTTAA
AACGGTTGCCCTGCTCCTGGAAGCAGGGGCAGATCCAGCGTTGAGAAACAAGGCCAATGAGCTCCCAGCA
GAACTAACCAAAAATGAACGCATACTGCACCTCCTGAGACAAAAAGAAGGACCTGGGAAGAATGAACTTG
GATCCATCTTAGATAGATAG

Translation (309 aa):
MCRMSFKKETPLANAAFWAAKRGNLALLKLLLNSGRVDVDCRDSHGTTLLMVASYAGHIDCVRELVLQGA
DINLQRESGTTALFFAAQQGHNDVVRFLFGFGASTECRTKDGGTALLAASQYGHMPVVETLLKHGANIHD
QLYDGATALFLAAQGGYLDVIRLLLSSGAKVNQPRQDGTAPLWIASQMGHSEVVRVMLLRGADRDAARND
GTTALLKAANKGYNDVIEELLKFSPTLGILKNGTSALHAAVLSGNVKTVALLLEAGADPALRNKANELPA
ELTKNERILHLLRQKEGPGKNELGSILDR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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