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Report for CCDS50234.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
50234.1 Public Mus musculus 18 Asxl3 23 108 98 CCDS HistoryNCBI Gene:211961Re-query CCDS DB by CCDS ID:50234.1Re-query CCDS DB by GeneID:211961See the combined annotation on chromosome 18 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 50234.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000097655.3 ENSMUSP00000095260.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000097655.3Link to Ensembl Protein Viewer:ENSMUSP00000095260.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000097655Re-query CCDS DB by Protein ID:ENSMUSP00000095260
Original member Current member EBI ENSMUST00000120223.7 ENSMUSP00000112793.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000120223.7Link to Ensembl Protein Viewer:ENSMUSP00000112793.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000120223Re-query CCDS DB by Protein ID:ENSMUSP00000112793
Original member Current member NCBI NM_001167777.1 NP_001161249.1 Accepted alive Link to Nucleotide Sequence:NM_001167777.1Link to Protein Sequence:NP_001161249.1Re-query CCDS DB by Nucleotide ID:NM_001167777Re-query CCDS DB by Protein ID:NP_001161249Link to BLAST:NP_001161249.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001161249.1 2204 Q8C4A5-2 2204 100% 0 0

Chromosomal Locations for CCDS 50234.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 18 (NC_000084.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18See the combined annotation on chromosome 18 in Sequence Viewer

Chromosome Start Stop Links
18 22409952 22410029 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 22411501 22411609 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 22434554 22434675 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 22452329 22452446 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 22453582 22453701 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 22465377 22465540 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 22509131 22509227 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 22512072 22512177 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 22515870 22517823 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 22521803 22525549 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (6615 nt):
ATGCTTCACACTAACACTCGAGTCGGGGATGGGACGTTCTTCAAAATCCCTGGAAAGTCGGGCCTCTATG
CTCTCAGAAAAGAGGAGTCATCATGCCCAGTGGATGGAACATTGGATCTAGTCGTTGACCCAGACCTGGA
TGGCGCTGAGATGGCAGAGGCCAGTGCCAACGGAGAAGAGAACAGGGTGTGTACGAAGCAGGTAACGGAT
GAAGTATCTTCCACTCGAGATTGCAGCCTTACGAACACGGCAGTGCAAAGCAAGCTGGTATCTTCCTTCC
AGCAGCACACCAAAAAGGCCCTGAAGCAGGCTTTGAGGCAGCAGCAGAAAAGAAGAAATGGAGTCTCAAT
GATGGTGAACAAGACTGTCCCTCGTGTTGTTTTGACACCATTAAAGGTGTCTGATGAGCAGTCGGATTCG
CCTTCAGGATCCGAGTCTAAAAATGGGGAAGCAGACAGTTCAGATAAAGAAATGAAACACGGGCAAAAAT
CTCCCACTGGAAAACAAACAAGTCAGCACTTAAAACGCTTAAAAAAGTCTGGTTTAGGACACTTGAAATG
GACCAAAGCTGAGGACATTGACATAGAAACCCCTGGCTCTATTCTTGTCAACACTAACCTGAGGGCACTA
ATCAACAAGCACACCTTTGCCTCCTTCCCTCAGCATTTCCAGCAGTATCTCCTGCTTCTGCTCCCAGAAG
TGGACAGGCAGATGGGAAGTGATGGAATTTTACGCCTCAGTACTTCAGCTCTAAATAATGAATTCTTTGC
ATACGCAGCACAAGGGTGGAAACAGCGACTGGCAGAAGGAGAGTTTACCCCAGAAATGCAATTACGAATA
AGGCAAGAAATTGAGAAGGAAAAGAAAACAGAACCTTGGAAAGAAAAATTCTTTGAGAGGTTTTATGGAG
AGAGATCGGGCATGTCCAGAGAAGAATCTATTAAGCTTACTTCTGGACCAAACCATGAAGGAGCTGAAGG
GAGTTCCTCACATGGGGACTCTGGCATTCCTGGTCCTTCTGCTCAGAATGCATTAGAAGAACAGCAACCA
AAAATCCTGAAAAGTTCAGCTTCCTTGGAGCCTGACTTCTGCACTACCGTTTGCCCTATGTTAGAGGTCC
CGGTGAAGGATGTAATGACAGAATCAGAAACAGAAGACATATTTATCCCGGAGGAATCTGTGATTCAGGA
GGAAGTGGCAGAGGAGGTAGAGACGAGTATCTACGAATGCCAAGATGAACATCTTAAGACAATTCCTGCG
TTTTCTGAGGAGTCGGAAAGTCCTGCCACCCCTTGTGAGGAACCCCAGGTAGCAGCCCCTGAAGATAGCT
TGGAGTCCTGTGTTGTAATGAATGATATTTTACACACTTTACCTCACATCGAAGTGAAGATAGTGGAGAA
ATTAGAATGTCCACAGGAAGAAATGTCAGTTGTTATTGACCAACTAGAAATCTGTGACTCTCTTCTTCCC
TGCCCTTCATCTGTCACCCATATCCTGGATGTGGAACAGAAGGAGCAAGAAACCACCATAGAAACCAGTG
CCATGGCCCTGAGAGAAGGGCCATCTTCTCTAGAAAGCCAACTTCCAAATGAGGGGATTGCTGTAGATAT
GGAGCTGCAGAGTGACCCCGAAGAACAGCTCTCAGAAAACGCTTGCATCTCTGAGACTTCTTTCTCCTCT
GAAAGTCCAGAGGGAGCATGTGCCAGCCTTCCATCCCCAGGCGGGGAAACACAGTCCACATCTGAAGAGT
CATGCACTCCAGCCTCTCTGGAAACAACATTCTGTTCTGAGGTATCCAGCACTGAGAATACAGATAAGTA
CAACCAGAGAAACCCCACTGGTGAGAGCCTTCATGCATCTCTCGTGTCAGAAGTATCTCCACTGGCCACC
TCACCTGAAATCTCAGAAGCATCTCTTATGTCCAACTTGCCTCTGACGTCTGAGGCATCACCAGTATCCA
ACTTACCTCTAACATCTGAAGCATCTCCAATGTCTGATTTACCACCGACATCAGAAACTTCCTCAGAGTC
TTCCATGCCTCTGACCTCTGAGACACCTTTTGTATCCAGTTTGCCAATTCCTGCAGAGACTTCTCCAATT
TCTAATTCTTCCGTGAATGAAAGAATGGTGCATCAACAGAGAAAGTCACCTTCAGGATCTGAAGAAGCTA
ACTCTCCACAGAAAGAGGAACCTTCCATCCCCACCAAGCCCCTGGGAGAGAGCCTTGTCTCCCACCCAAA
GCCTTTGTCCACCATTCCAGAACCCATCAACATGAGTTCTGCCATGGTGCCTGAAGCACTTCCACCTGAA
GGATTGCATAGTCAGACTCTGAGTCAGGAGCCTTGTAACGCTCATGTTGAAATGGAAAAGCTCTATGCCT
CTTCCATCCCAGAACTTCCTTCCTCAGAGATGACAAAAGTTAAAAACCATAGTGTTCTGCAAAGACCTGA
AAAGAAAGGGTTGTCTGCACCATTGGAAGTCCCTGTCTTTTCTGAGGAAACGGAGACCAAGGGAATCGAG
CTTCCTCCAGCTAAACTACAGGACAAGCAATATGCACCATCAGTAGATAAGGCTACATTTCTAGAAGGCT
CAAGAAACAAAATTCATAAACAGAGCAGTACACTAAATCGATTGGAGACCTCACATACTTCCAAAGTATC
AGAGCCCTCCAAGTCCCCCGATGGGATAAGAAATGACAATAGAGAGTCAGAGATATCAAAAAGGAAAACC
GTGGAACACAGCTTTGGAATATGTAAAGAAAAAAGAGCTAGGATAGAAGATGATCAGTCAGCCCGCAGCC
TAGCATCCAGCAGTCCTCCTGAGAAAGAGCAGCCACCACGGGAGGAGCCCAGGGTTCCCCCTCTAAAGAT
ACAGCTTTCTAAAATTGGGCCACCTTTTATCATTAAGAGCCAGCCAGTCTCCAAAGCAGAGTCCAGGGCA
TCCACTAGTACATCAGTCAGCAGTGGGAGGAACACGGGAGCCAGGACCCTTGCAGACATCAAGGCCCGTG
CTCAACAAGCCCGGGCCCAGCGTGAGGCTGCTGCAGCTGCTGCAGTTGCAGCTGCAGCGAGCATTGTCTC
AGGAGCCATGGGAAGCCCAGGAGAAGGTGGGAAGGCAAGAACCCTAGCCCACATCAAGGAGCAGACCAAA
GCTAAGCTCTTTGCAAAACATCAGTCCAGAGCCCACCTCTTCCAGACCTCCAAGGAGACCCGGTTACCTT
CTGTCAGCACGAAGGAAGACTCTCTCAATATGGAAGCCTCTCCTACCCCTGAGACAAAAATGGAAGGCTC
TACAGGAGTCATCATCATCAATCCAAACTGCAGATCTCCTAGCAGCAAGCCCACACACATCCGGGAGATC
ACCACTGTACTACAGCAGCCTCTGAACCCACCTCAGATTCCAGAAACTGCCACTGACTTGTCTGTGCATA
GTTCTGATGACAACATACCTGTGTCACATTTAACTGAGAAAATTGTTTCATCTACCTCTTCAGAAAATAG
CAGTGTACCCATACTTCATAATAAAAGTCCCATCAACCCCATCCCGATGTCTGTCTGCAGCACTGCTATG
TCAGGAGCAATTAAAGAGCATCCCTTTGTGAGTCCTGTTGACAAATCTTCTGTCCTCATGTCTGTTGACA
GTGCAAACAGTACAATTTCTGCTTGTAATATAAGCATGTTGAAATCCATCCAGGGATCTGATGCTCCATG
CATAGCCCTTGTACCAAAATGTATCAACAGGACTCCTATACCAGCTGCTCCAGAAGGTACTGGACAGTCA
AACTCCATGGATGGGAAGGCCCTGCTTGTACCCAGCAGCAAGGCTGCTAACGTAATATCTAATCAGTACA
CTTCTGTGCCAGCTCCCACCATTGCAAGTAATTTGCCAAACCATCTCTGCACTAGCTCTGTCTTGATTCC
CCCCACAGGGATTAATAACAGATTTGTTTCTGAGAAGATAGCCATGCCTGGGAGTGAAGAGCAGGCCGCC
GTGTCCATAGGTGCCACCATGAGAACAGCCCTCAGCTGTGGTGATTCAGTGGCTGTCACTGATTCACTGG
TTCCACGCTCGCCCATCGCAATGTTTGCAGGAAACATGCTCACTGCAAACTCTTACAACTGTCCTCCCAA
ATTAAGTGGGGAGAACTTGGACAACAATTCAGGGCCTCTAAACAGAACAGACAATTCTGAGAAACCTCAG
CAGCCAGCAGGGGGCTTTGTCCCAGCAACCATAAACAGATCAATTCCCTGTAAAGTCATAGTGGACCACA
GCACAACGCTGACCTCCAATTTGTCTCTGACTGTCTCCATTGAAAGTGGAGACTCAAGTTTGGATTCCCA
GACTAGGTCGGTGAGGACAGACGTATCCATCCAGCCCGTGGCATGTCCTCAGGTGTCTGTCATCAGTAGA
CCTGAGCAGGCCACAAGTGAAGGGCTTGACCATGGTTCTGTTTTCATTGCTGCTCCTACGGCCAAACAGG
ACTGTAAGACACTGCAGGCCACTTGCACCAGTCTCCGAGAATTGCCCCTTACTCTTCCAGATAAACTAAA
TGAAGTGACCGTACCTACTCATGGCTTTGCTGAGCAAGCACGAAACTCAAGTACTTTCAAGAAAGAAACA
GACACAGCCTGTAGCAATCAGTATAACCCAGGAAACCGCATTTGCTGGAGTGAAGACCCAATGAGAAACA
CAGCACCGCCTGTGGTTAGTCATTCAAGCTCAAGTAAACAGAAAGAACATCCAGAGCAGACTGGCCTGAA
GGCTGTGAAGACAGAGCATGTCAGCTATGCACACGTGTCAGATCTCCACCCTAGGAATCTCATCACGAAT
GTCAGTCTTCCTGTGAAGCCTGAACCTCATGAAGTAGACAAGGGCTTTAGAATGGACACTGAGGACTTTC
CTGGTCCCGAGCGTCCTCCTCCAGTCACAGAGGTGACAAGCAGTGCCAGTGTGCAACCAACACAGACCAT
GAAGCCTTCCACCACAAGCCCTGTGGAAGAGGCTATTTCCTTGGCTCCAGACACCCTGAAAAGAATTCCA
AGTGCAAGCAGCTCAAGCTGCCGCCTGTCTTCCGTGGAAGCTAATAACCCACTGGTGACACAGCTACTGC
AGGGCAACCTGCCTCTGGAGAAGGTGTTGCCACAGCCAAGATTGGGAGCCAAACTTGAAATCAACAGACT
CCCTCTGCCCCTTCAAACTACCTCAGTGGGTAAGACAGGGCTGGAAAGAAACATGGTTGAAATGCCATCC
AGCTCTCCTAATCCAGACGGGAAGGGCTATTTGGCAGGGACTCTAGCACCAGTCCAAATGAGAAAGCGAG
AAAACCATCCCAAAAAGAGAGCAGCCAGGACAGTGGGAGACCATGCTCAAGTTAAATGTGAACCAGGGAA
GATGGTGATGGAGCCCGATGTCAAAGCGGTACCCTGCGTCATCAGTCCCAGCATGAGTCAGCTAGGACAC
AACCAGCCATTTAAGCAGGAACGGCTTAATAAGCCCTCCATGGCCAACAGGATCATGCCCAGCCCTGAGG
TCAAACAACAAAAGCGGCTGTTGCCTGCATGTAGCTTCCAGCCGAGCCTGTTCCATGTGAACAAAAATGA
AGGCTTCCACGCTGACACTGGTACCTCACATAGACAGCAGTTCTACCAAATGCCCATGGCTGCCAGGGGA
CCCCTTCCCACTCCTGCTCTGTTACAGAACTCTCCCAAGACCCCAGTGGGCTGTAATGCATTTGCCTTCA
ATAGGCATCTTGAACAAAAAGCATTGGGAGATGTGAATCTTCCCACAGCACCTCACCAGCTAAGACTAGC
CAATATGTTGTCCCCCAACATGCCTATAAAAGAAGGCGAGGATGGAGGAGGCACCACACACACAATGCCA
AGCAAAGCAGTGGTCCATGCTCCACTGCCACCTCCACCACCCCCTCCACCACCACCCCCTCCACCCTTGG
CCTTGCCCCCGCCACCCCCTCCACCCCCTCCACTACCTCCACCTCTTCCCACTGTAGAAGTCCCATCCGA
TCAAAAGCAACCACCAGTTAACATGGAAACCACTAAGCGACTTAGTTGGCCCCAGTCCACGGGCATATGT
AGCAATATCAAATCAGAACCTCTTTCTTTTGAGGAAAGTTTAAGCAGCAGCTGTGAACTGGGCATGAAGC
AGGTTCCCTATGACCAGAACGAAGTGAAAGAGCAGCTGAAGGCATTTGCATTAAAAAATGCAGATTTTTC
TTCCTACTTGCTCTCTGAGCCCCAAAAGCCTTTTACCCAATTAGCTGCTCAAAAACTACCAGTACCCCAG
CAACAACCGCTCTGTGGAAGTTACCCGACGATACACTTTGGGAGCACAAATTTCAAAAGGGCAGCATCTG
CCATTGAAAAGTCCATTGGGATTCTGGGAAGTGGCTCCAACCCCGCCACCAGCACGGGTCTGACAGGTCA
AAACACTCAGATGCCAGTTCAGAACTTTGCAGACAACAGCAACGCAGATGAGTTAGAGCTGAAATGTTCT
TGCCGGCTCAAAGCCATGATTGTGTGCAAAGGCTGTGGGGCCTTCTGCCACGATGACTGCATAGGTCCAT
CCAAACTTTGTGTAGCTTGCCTGGTTGTCCGATAA

Translation (2204 aa):
MLHTNTRVGDGTFFKIPGKSGLYALRKEESSCPVDGTLDLVVDPDLDGAEMAEASANGEENRVCTKQVTD
EVSSTRDCSLTNTAVQSKLVSSFQQHTKKALKQALRQQQKRRNGVSMMVNKTVPRVVLTPLKVSDEQSDS
PSGSESKNGEADSSDKEMKHGQKSPTGKQTSQHLKRLKKSGLGHLKWTKAEDIDIETPGSILVNTNLRAL
INKHTFASFPQHFQQYLLLLLPEVDRQMGSDGILRLSTSALNNEFFAYAAQGWKQRLAEGEFTPEMQLRI
RQEIEKEKKTEPWKEKFFERFYGERSGMSREESIKLTSGPNHEGAEGSSSHGDSGIPGPSAQNALEEQQP
KILKSSASLEPDFCTTVCPMLEVPVKDVMTESETEDIFIPEESVIQEEVAEEVETSIYECQDEHLKTIPA
FSEESESPATPCEEPQVAAPEDSLESCVVMNDILHTLPHIEVKIVEKLECPQEEMSVVIDQLEICDSLLP
CPSSVTHILDVEQKEQETTIETSAMALREGPSSLESQLPNEGIAVDMELQSDPEEQLSENACISETSFSS
ESPEGACASLPSPGGETQSTSEESCTPASLETTFCSEVSSTENTDKYNQRNPTGESLHASLVSEVSPLAT
SPEISEASLMSNLPLTSEASPVSNLPLTSEASPMSDLPPTSETSSESSMPLTSETPFVSSLPIPAETSPI
SNSSVNERMVHQQRKSPSGSEEANSPQKEEPSIPTKPLGESLVSHPKPLSTIPEPINMSSAMVPEALPPE
GLHSQTLSQEPCNAHVEMEKLYASSIPELPSSEMTKVKNHSVLQRPEKKGLSAPLEVPVFSEETETKGIE
LPPAKLQDKQYAPSVDKATFLEGSRNKIHKQSSTLNRLETSHTSKVSEPSKSPDGIRNDNRESEISKRKT
VEHSFGICKEKRARIEDDQSARSLASSSPPEKEQPPREEPRVPPLKIQLSKIGPPFIIKSQPVSKAESRA
STSTSVSSGRNTGARTLADIKARAQQARAQREAAAAAAVAAAASIVSGAMGSPGEGGKARTLAHIKEQTK
AKLFAKHQSRAHLFQTSKETRLPSVSTKEDSLNMEASPTPETKMEGSTGVIIINPNCRSPSSKPTHIREI
TTVLQQPLNPPQIPETATDLSVHSSDDNIPVSHLTEKIVSSTSSENSSVPILHNKSPINPIPMSVCSTAM
SGAIKEHPFVSPVDKSSVLMSVDSANSTISACNISMLKSIQGSDAPCIALVPKCINRTPIPAAPEGTGQS
NSMDGKALLVPSSKAANVISNQYTSVPAPTIASNLPNHLCTSSVLIPPTGINNRFVSEKIAMPGSEEQAA
VSIGATMRTALSCGDSVAVTDSLVPRSPIAMFAGNMLTANSYNCPPKLSGENLDNNSGPLNRTDNSEKPQ
QPAGGFVPATINRSIPCKVIVDHSTTLTSNLSLTVSIESGDSSLDSQTRSVRTDVSIQPVACPQVSVISR
PEQATSEGLDHGSVFIAAPTAKQDCKTLQATCTSLRELPLTLPDKLNEVTVPTHGFAEQARNSSTFKKET
DTACSNQYNPGNRICWSEDPMRNTAPPVVSHSSSSKQKEHPEQTGLKAVKTEHVSYAHVSDLHPRNLITN
VSLPVKPEPHEVDKGFRMDTEDFPGPERPPPVTEVTSSASVQPTQTMKPSTTSPVEEAISLAPDTLKRIP
SASSSSCRLSSVEANNPLVTQLLQGNLPLEKVLPQPRLGAKLEINRLPLPLQTTSVGKTGLERNMVEMPS
SSPNPDGKGYLAGTLAPVQMRKRENHPKKRAARTVGDHAQVKCEPGKMVMEPDVKAVPCVISPSMSQLGH
NQPFKQERLNKPSMANRIMPSPEVKQQKRLLPACSFQPSLFHVNKNEGFHADTGTSHRQQFYQMPMAARG
PLPTPALLQNSPKTPVGCNAFAFNRHLEQKALGDVNLPTAPHQLRLANMLSPNMPIKEGEDGGGTTHTMP
SKAVVHAPLPPPPPPPPPPPPPLALPPPPPPPPPLPPPLPTVEVPSDQKQPPVNMETTKRLSWPQSTGIC
SNIKSEPLSFEESLSSSCELGMKQVPYDQNEVKEQLKAFALKNADFSSYLLSEPQKPFTQLAAQKLPVPQ
QQPLCGSYPTIHFGSTNFKRAASAIEKSIGILGSGSNPATSTGLTGQNTQMPVQNFADNSNADELELKCS
CRLKAMIVCKGCGAFCHDDCIGPSKLCVACLVVR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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