NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS50393.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
50393.1 Public Mus musculus 19 Ms4a20 23 108 98 CCDS HistoryNCBI Gene:69369Re-query CCDS DB by CCDS ID:50393.1Re-query CCDS DB by GeneID:69369See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 50393.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000025635.7 ENSMUSP00000025635.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000025635.7Link to Ensembl Protein Viewer:ENSMUSP00000025635.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000025635Re-query CCDS DB by Protein ID:ENSMUSP00000025635
Original member Current member NCBI NM_027058.1 NP_081334.1 Accepted alive Link to Nucleotide Sequence:NM_027058.1Link to Protein Sequence:NP_081334.1Re-query CCDS DB by Nucleotide ID:NM_027058Re-query CCDS DB by Protein ID:NP_081334Link to BLAST:NP_081334.1

Chromosomal Locations for CCDS 50393.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 19 (NC_000085.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 11096937 11097067 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 11101804 11101924 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 11105677 11105796 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 11110308 11110361 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 11112316 11112459 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 11116407 11116466 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (630 nt):
ATGTCAATAAATGAAGTATCAACATTCTATATCATAAAAGAAGATACAATTGCAATGGGAGGTGCACAAA
TA
ATGCTTGGCCTAATTCACAATGCACTGGGGACTCTCTGGCTCTCTTTGCACAATCTAGAAGACAAGAG
A
TATAGCATCGGCCATAAACTTATGTTAGCTAGTATCTGCTACCTGTTTGTGTCTGGAACATTTTTCATC
AAC
TCAGGATCCAGCAGTATAACTCAGGGTATTTCTTCAGTATTTCAGCATATGTTTGCAATTATAACAA
AC
ATCATAAGTATCTTCGTGGCTATATTTGGTTTAATTCTACTTGGATATGAATTTCCAATTTTTGAATC
A
ATAGGAACTGAATACATTTGGTCAAATATGGCTGGCATGATGCTTCTACAAATTTCTGTCATGTGTGCC
ATC
ACAGAGCTGGTTATTGCAATCCTAGTGCTGCACTGGTTCATAACAGCACATAAAATTGAAGAACCCT
CA
GAAGAAATTTTCTCAGGTCCCTCCCATTCACACCTATCATCACCACCTTCAACACAGCCATCTATGCT
T
GAGTTGGAGAATGTCTCTGAACAATCCCATCCAAAAGATATAGAAGATGAAAATGATGTGACTAACTGA


Translation (209 aa):
MSINEVSTFYIIKEDTIAMGGAQIMLGLIHNALGTLWLSLHNLEDKRYSIGHKLMLASICYLFVSGTFFI
N
SGSSSITQGISSVFQ
HMFAIITNIISIFVAIFGLILLGYEFPIFESIGTEYIWSNMAGMMLLQISVMCA
I
TELVIAILVLHWFITAHKIEEPSEE
IFSGPSHSHLSSPPSTQPSMLELENVSEQSHPKDIEDENDVTN



Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser