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Report for CCDS50477.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
50477.1 Public Mus musculus 19 Afap1l2 23 108 98 CCDS HistoryNCBI Gene:226250Re-query CCDS DB by CCDS ID:50477.1Re-query CCDS DB by GeneID:226250See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 50477.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000111584.8 ENSMUSP00000107210.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000111584.8Link to Ensembl Protein Viewer:ENSMUSP00000107210.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000111584Re-query CCDS DB by Protein ID:ENSMUSP00000107210
Original member Current member NCBI NM_001177796.1 NP_001171267.1 Accepted alive Link to Nucleotide Sequence:NM_001177796.1Link to Protein Sequence:NP_001171267.1Re-query CCDS DB by Nucleotide ID:NM_001177796Re-query CCDS DB by Protein ID:NP_001171267Link to BLAST:NP_001171267.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001171267.1 843 Q5DTU0-2 843 100% 0 0

Chromosomal Locations for CCDS 50477.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 19 (NC_000085.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 56913382 56913408 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 56914125 56914253 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 56914370 56914563 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 56915672 56915827 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 56916062 56916242 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 56916324 56916572 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 56917126 56917237 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 56917982 56918127 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 56920377 56920588 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 56922935 56923039 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 56923533 56923617 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 56925067 56925156 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 56928249 56928428 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 56930056 56930261 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 56937235 56937325 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 56943445 56943539 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 56944705 56944779 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 56950138 56950266 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 57002250 57002303 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 57008151 57008166 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2532 nt):
ATGGAGCGCTACAAAGCACAGGGCTGTTGCTGTCTGGTGGTGCAGAGAAGAATCCTGCAGGTCTCTGCTT
CCCTGGAGCAGCTGCTGACAGAGCTGGACGACTTCCTTAAGGTCCTCGACCAGGAGAACCTGAGCAGTGC
AGCCGTGCTGAAGAAGAGCGGCCTGTCAGAGCTCCTGCGGCTTTACACCAAGAGCAGCAGTTCTGATGAG
GAGTATATTTACATGAACAAAGTGTCAGTCAACGGGGAACAAAACTCAGCATCTCCAGACAAAGTTCCCG
AGGAGCAGGGTCCACTGACCAATGGGGAGCCCAGCCAGCATTCCTCAGCCCCTCAGAAGAGCCTTCCAGA
CCTCCCTCCGCCCAAGATGATTCCAGAGAGGAAACAGCCCACCGTTCCAAAGATCGAGTCCCCTGAGGGC
TACTATGAAGAGGCTGAGCCATTTGACAGATCCATCAATGAGGATGGAGAGGCTGTGAGCAGCTCCTACG
AGTCCTACGATGAGGACGAGAACAGCAAAGGCAAGGCTGCCCCCTACCAGTGGCCCTCGCCCGAGGCCAG
CATTGAGCTGATGCGTGATGCCCGCATCTGTGCCTTCCTGTGGCGCAAGAAGTGGCTAGGCCAGTGGGCC
AAGCAGCTCTGTGTGATCAGGGACACCAGGCTCTTGTGCTACAAATCGTCCAAAGACCACAGTCCTCAGC
TGGACGTGAACCTGCGGGGCAGCAGCGTCGTGCACAAGGAGAAGCAAGTGCGGAAGAAAGGACACAAGCT
CAAGATCACACCGATGAACGCTGACGTTATCGTGCTGGGCCTGCAGAGCAAGGACCAAGCTGAGCAGTGG
CTTCGGGTCATCCAGGAGGTGAGTGGCCTGCCTTCTGAAGGAGCCTCAGAGGGAAACCAGTACACACCAG
ATGCCCAGCGCCTCAACTGTCAGAAACCAGACATAGCTGAGAAGTACCTGTCAGCAGCGGAGTACGGGAT
CACCATCAACGGCCACCCTGAGATCCCAGAGACCAAAGATGTCAAGAAGAAATGCTCTGCTGGCCTCAAG
CTGAGCAACCTTATGAACCTGGGCAGGAAGAAATCTACCTCGCTGGAGCCCCCGGAGAGATCCCTTGAGA
CATCCAGCTACCTGAATGTGCTGGTGAACAGTCAATGGAAGTCACGCTGGTGCTTCGTTAGAGACAGCCA
CCTGCACTTCTACCAGGACCGGAACCGGAGCAAGGTGGCCCAGCAGCCCCTCAGCCTGGTGGGCTGTGAC
GTGCTTCCAGATCCTAGCCCCGACCACCTGTATTCCTTCCGTATTCTCCACAACGGCGAGGAGCTAGCCA
AGCTTGAGGCCAAGTCTTCAGAGGAGATGGGCCACTGGCTAGGCCTCCTGCTCTCAGAGTCGGGCTCCAA
GACTGACCCGGAAGAGCTCACCTACGACTATGTGGATGCTGAAAGGGTTTCCTGTATTGTGAGTGCGGCC
AAAACCTCTCTCTTACTGATGCAGAGAAAGTTCTCAGAGCCCAACACATACATCGATGGCCTGCCCAGCC
GGGATTGCCAGGACGATCTGTATGATGATGTGGAGGTATCAGAGCTGATAGCCGTGGTGGAGCCTGCCGA
GGAAGCCGCCCCTGCTGTCGATGCTAACAGTGGTAGTGAGCCAGACAGAGTCTACCTGGATCTCACACCG
GTCAAGTCCTTCCTGCACAGTAGCAGTGAGGCTCAGGCGCAGGCCTCTCTCCCAGCAGTGCCACATCAGG
ACGATGTAGCTGAGACCCTCACAGTAGACCCAAAGCCAGGCACCACCCCAGAGGAGCCCCACACAGAGTC
TCCAGGAGACCCAGAGGTGCAGCAGAGGCAACCAGAGGTTCAAGAGTCTTCAGAGCCTATCGAGCCCACC
CCGCGAATCACCATGGTTAAGCTACAGGCCGAGCAGCAGAGAATCTCCTTCCCAGCCAACTGCCCAGACA
CCATGGCTTCTGCCCCCATCGCTGCCAGCCCACCTGTGAAGGAGAAGCTGAGAGTGACCAGTGCAGAGAT
CAAACTTGGGAAGAATCGGACAGAGGCGGAAGTAAAGCGGTACACGGAGGAGAAGGAGAGGCTGGAGAGG
AGCAAGGAGGAGATCCGAGGGCACCTGGCTCAGCTCCGCAGAGAGAAGCGGGAGCTCAAAGAGACCCTGT
TGAGATGCACAGATAAGGGGGTCCTGGCCAAGCTGGAGCAGACACTGAAGAAAATAGACGAGGAATGCCG
GATGGAGGAGAGCAGGCGTGTGGACCTTGAGCTCAGCATCATGGAGGTGAAGGACAACCTGAAGAAGGCA
GAGGCTGGGCCCGTGACCCTGGGCACCACTGTGGATACCACGCACCTGGACAACATGAGCCCTCGTCCAC
AGCCCAAAGCTGCCACCCCCAACCCCCCACCAGACTCCACGCCAGTCAACTCTGCATCTGTGCTCAAGAA
CAGGCCTCTTTCCGTCATGGTCACAGGCAAAGGCACTGTCCTGCAGAAAGCCAAGGAATGGGAGAAGAAA
GGAGCCAGTTAG

Translation (843 aa):
MERYKAQGCCCLVVQRRILQVSASLEQLLTELDDFLKVLDQENLSSAAVLKKSGLSELLRLYTKSSSSDE
EYIYMNKVSVNGEQNSASPDKVPEEQGPLTNGEPSQHSSAPQKSLPDLPPPKMIPERKQPTVPKIESPEG
YYEEAEPFDRSINEDGEAVSSSYESYDEDENSKGKAAPYQWPSPEASIELMRDARICAFLWRKKWLGQWA
KQLCVIRDTRLLCYKSSKDHSPQLDVNLRGSSVVHKEKQVRKKGHKLKITPMNADVIVLGLQSKDQAEQW
LRVIQEVSGLPSEGASEGNQYTPDAQRLNCQKPDIAEKYLSAAEYGITINGHPEIPETKDVKKKCSAGLK
LSNLMNLGRKKSTSLEPPERSLETSSYLNVLVNSQWKSRWCFVRDSHLHFYQDRNRSKVAQQPLSLVGCD
VLPDPSPDHLYSFRILHNGEELAKLEAKSSEEMGHWLGLLLSESGSKTDPEELTYDYVDAERVSCIVSAA
KTSLLLMQRKFSEPNTYIDGLPSRDCQDDLYDDVEVSELIAVVEPAEEAAPAVDANSGSEPDRVYLDLTP
VKSFLHSSSEAQAQASLPAVPHQDDVAETLTVDPKPGTTPEEPHTESPGDPEVQQRQPEVQESSEPIEPT
PRITMVKLQAEQQRISFPANCPDTMASAPIAASPPVKEKLRVTSAEIKLGKNRTEAEVKRYTEEKERLER
SKEEIRGHLAQLRREKRELKETLLRCTDKGVLAKLEQTLKKIDEECRMEESRRVDLELSIMEVKDNLKKA
EAGPVTLGTTVDTTHLDNMSPRPQPKAATPNPPPDSTPVNSASVLKNRPLSVMVTGKGTVLQKAKEWEKK
GAS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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