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Report for CCDS50494.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
50494.1 Public Mus musculus 2 Celf2 23 108 98 CCDS HistoryNCBI Gene:14007Re-query CCDS DB by CCDS ID:50494.1Re-query CCDS DB by GeneID:14007See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 50494.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000114924.9 ENSMUSP00000110574.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000114924.9Link to Ensembl Protein Viewer:ENSMUSP00000110574.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000114924Re-query CCDS DB by Protein ID:ENSMUSP00000110574
Original member Current member EBI ENSMUST00000114934.10 ENSMUSP00000110584.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000114934.10Link to Ensembl Protein Viewer:ENSMUSP00000110584.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000114934Re-query CCDS DB by Protein ID:ENSMUSP00000110584
Original member Current member NCBI NM_001110228.1 NP_001103698.1 Accepted alive Link to Nucleotide Sequence:NM_001110228.1Link to Protein Sequence:NP_001103698.1Re-query CCDS DB by Nucleotide ID:NM_001110228Re-query CCDS DB by Protein ID:NP_001103698Link to BLAST:NP_001103698.1
Original member Current member NCBI NM_001160293.1 NP_001153765.1 Accepted alive Link to Nucleotide Sequence:NM_001160293.1Link to Protein Sequence:NP_001153765.1Re-query CCDS DB by Nucleotide ID:NM_001160293Re-query CCDS DB by Protein ID:NP_001153765Link to BLAST:NP_001153765.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001103698.1 526 Q9Z0H4-9 526 100% 0 0
NP_001153765.1 526 Q9Z0H4-9 526 100% 0 0

Chromosomal Locations for CCDS 50494.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 6547086 6547213 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 6549832 6549975 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 6553785 6553964 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 6560671 6560790 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 6585974 6586108 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 6600034 6600097 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 6604024 6604182 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 6607882 6607961 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 6615688 6615822 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 6624671 6624719 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 6664115 6664197 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 6721417 6721613 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 6884852 6884958 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1581 nt):
ATGTTTGAGCGCACTTCTGAACTGGCTTTTGTTGAGACTATCAGTGTAGAAAGCATGCGCTGTCCCAAAT
CCGCTGTTACTATGAGAAATGAGGAGCTGCTTTTAAGTAACGGCACAGCCAACAAGATGAACGGAGCTTT
GGATCATTCAGACCAGCCAGACCCAGATGCCATTAAGATGTTTGTCGGACAGATCCCTAGGTCCTGGTCG
GAAAAGGAGCTGAAAGAACTTTTTGAGCCTTATGGAGCTGTCTACCAGATCAACGTCCTCCGGGACCGGA
GTCAGAACCCTCCCCAGAGTAAAGGTTGTTGTTTCGTAACATTTTATACAAGAAAAGCTGCACTTGAGGC
CCAGAATGCACTGCACAATATTAAAACTTTACCTGGGATGCATCATCCCATTCAGATGAAACCTGCAGAT
AGTGAAAAGTCAAACGCTGTGGAAGACAGAAAATTGTTCATAGGAATGGTTTCCAAGAAATGTAACGAGA
ATGATATCAGAGTGATGTTTTCTCCATTCGGTCAGATAGAAGAATGCCGGATTCTCCGGGGACCTGATGG
GCTGAGTCGAGGCTGTGCGTTTGTCACATTTTCTACAAGGGCAATGGCACAGAATGCAATCAAAGCCATG
CATCAGTCTCAGACCATGGAGGGCTGCTCTTCACCAATCGTGGTGAAGTTTGCTGACACTCAGAAGGACA
AAGAGCAAAGGCGCCTCCAGCAGCAGCTTGCACAGCAGATGCAACAGCTCAACACTGCCACTTGGGGGAA
CCTAACAGGACTGGGTGGACTTACCCCGCAGTACCTGGCGCTTCTGCAGCAGGCCACCTCCTCCAGCAAC
CTGGGTGCATTCAGTGGCATTCAGCAAATGGCTGGCATGAATGCTTTACAGTTACAGAATCTGGCAACAC
TGGCTGCTGCTGCAGCTGCTGCTCAAACCTCAGCCACCAGCACCAATGCAAACCCTCTGTCTAGCACAAG
CAGTGCCCTGGGAGCCCTCACAAGCCCTGTGGCTGCTTCAACCCCCAATTCCACCGCTGGTGCGGCCATG
AATTCCTTGACCTCTCTTGGGACTCTACAAGGATTGGCTGGAGCCACTGTCGGATTGAATAATATTAATG
CACTAGCAGGTATGGCGGCTCTGAATGGAGGACTTGGCGCCACAGGCTTGACGAATGGTACGGCTGGCAC
CATGGACGCCCTGACCCAGGCCTACTCAGGAATTCAGCAGTATGCGGCAGCTGCACTGCCCACTTTGTAC
AGCCAGAGCTTGCTGCAACAGCAGAGTGCTGCAGGCAGCCAGAAGGAAGGTCCAGAGGGGGCAAACCTCT
TTATTTACCACCTTCCACAGGAGTTTGGAGACCAGGACATTCTGCAGATGTTCATGCCCTTTGGAAATGT
TATCTCTGCTAAAGTCTTCATTGACAAACAGACCAATCTGAGCAAGTGCTTTGGTTTTGTTAGCTATGAC
AATCCAGTCTCTGCACAAGCTGCAATCCAGGCTATGAACGGCTTTCAGATCGGCATGAAACGCTTGAAGG
TGCAGCTGAAACGCTCCAAAAACGACAGCAAACCTTACTGA

Translation (526 aa):
MFERTSELAFVETISVESMRCPKSAVTMRNEELLLSNGTANKMNGALDHSDQPDPDAIKMFVGQIPRSWS
EKELKELFEPYGAVYQINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNIKTLPGMHHPIQMKPAD
SEKSNAVEDRKLFIGMVSKKCNENDIRVMFSPFGQIEECRILRGPDGLSRGCAFVTFSTRAMAQNAIKAM
HQSQTMEGCSSPIVVKFADTQKDKEQRRLQQQLAQQMQQLNTATWGNLTGLGGLTPQYLALLQQATSSSN
LGAFSGIQQMAGMNALQLQNLATLAAAAAAAQTSATSTNANPLSSTSSALGALTSPVAASTPNSTAGAAM
NSLTSLGTLQGLAGATVGLNNINALAGMAALNGGLGATGLTNGTAGTMDALTQAYSGIQQYAAAALPTLY
SQSLLQQQSAAGSQKEGPEGANLFIYHLPQEFGDQDILQMFMPFGNVISAKVFIDKQTNLSKCFGFVSYD
NPVSAQAAIQAMNGFQIGMKRLKVQLKRSKNDSKPY


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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