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Report for CCDS50500.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
50500.1 Public Mus musculus 2 Pfkfb3 23 108 98 CCDS HistoryNCBI Gene:170768Re-query CCDS DB by CCDS ID:50500.1Re-query CCDS DB by GeneID:170768See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 50500.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000170196.8 ENSMUSP00000126305.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000170196.8Link to Ensembl Protein Viewer:ENSMUSP00000126305.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000170196Re-query CCDS DB by Protein ID:ENSMUSP00000126305
Original member Current member NCBI NM_001177756.1 NP_001171227.1 Accepted alive Link to Nucleotide Sequence:NM_001177756.1Link to Protein Sequence:NP_001171227.1Re-query CCDS DB by Nucleotide ID:NM_001177756Re-query CCDS DB by Protein ID:NP_001171227Link to BLAST:NP_001171227.1

Chromosomal Locations for CCDS 50500.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 11474537 11474543 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 11478036 11478058 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 11480198 11480371 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 11481247 11481333 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 11481871 11481935 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 11482054 11482116 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 11482445 11482574 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 11483929 11484033 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 11484205 11484351 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 11484655 11484862 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 11486219 11486343 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 11488726 11488782 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 11489671 11489745 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 11490290 11490356 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 11492560 11492656 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 11493903 11494028 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 11501625 11501700 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1632 nt):
ATGCCGTTGGAACTGACCCAGAGCCGGGTACAGAAGATCTGGGTGCCCGTCGATCACCGACCCTCGTTGC
CCAGATCCTGTGGGCCGAAGCTGACCAACTCCCCAACCGTGATTGTGATGGTGGGGCTCCCAGCCCGGGG
TAAGACTTACATCTCCAAGAAGCTGACTCGCTACCTCAACTGGATAGGTGTTCCAACGAAAGTGTTCAAT
GTGGGAGAGTATCGGCGTGAGGCTGTGAAGCAGTACAGCTCTTACAACTTCTTCCGCCCTGACAATGAGG
AAGCCATGAGAGTCCGAAAACAGTGTGCCTTAGCTGCCCTGAGAGATGTCAAAAGCTACCTGACAAAGGA
AGGTGGACAGATTGCAGTTTTTGATGCCACCAATACAACTAGAGAAAGAAGGCACATGATCCTTAATTTT
GCCAAAGAAAATGACTTCAAGGCATTTTTCATCGAGTCGGTCTGTGACGACCCTACTGTTGTGGCCTCCA
ACATCATGGAAGTTAAAATCTCCAGCCCGGATTACAAAGACTGCAACTCAGCAGAAGCCATGGACGACTT
CATGAAGAGAATCAATTGCTATGAAGCCAGCTACCAGCCTCTTGACCCTGATAAATGTGACAGGGACTTG
TCACTCATCAAAGTGATTGATGTTGGCCGGAGGTTCTTGGTGAACAGAGTGCAGGACCACATCCAGAGCC
GAATTGTATACTACCTGATGAACATCCACGTGCAGCCCCGTACCATCTACCTGTGTCGGCATGGCGAGAA
TGAGTACAACTTGCAGGGCAAGATTGGGGGCGACTCAGGCTTGTCCAGCAGAGGCAAGAAGTTCGCCAAT
GCCCTGAGCAAGTTCGTAGAAGAACAGAATCTGAAGGACCTCCGTGTGTGGACCAGCCAGCTGAAAAGTA
CCATTCAGACCGCGGAGGCCCTGAGGCTCCCCTACGAGCAGTGGAAGGCACTCAACGAGATCGATGCTGG
TGTGTGTGAGGAACTAACCTATGAGGAGATCAGAGATACCTACCCTGAGGAGTACGCACTGCGTGAACAG
GACAAGTACTACTATCGCTATCCCACGGGAGAGTCCTACCAGGATCTTGTCCAACGCCTGGAGCCTGTGA
TCATGGAATTAGAGCGCCAAGAGAATGTATTGGTCATCTGTCACCAGGCTGTTCTACGCTGCCTACTAGC
CTACTTCCTCGACAAGAGTGCAGAGGAGATGCCATACCTGAAATGTCCGCTCCACACTGTCCTGAAACTG
ACACCTGTGGCATATGGGTGCCGGGTGGAGTCCATTTACTTGAATGTAGAATCGGTGAGCACACACCGGG
AGAGGTCAGAGGCTGTCAAAATACAACACTTTGCCAGTGTAGTCAGACCTTCCTCTTACACCGAACTTGA
CTTTCAGTCTGTGGAGTCCGCAAAACAGGATGCAAAGAAGGGACCTAACCCGCTCATGAGACGCAATAGT
GTCACCCCACTAGCCAGTCCCGAGCCCACCAAAAAGCCTCGCATCAACAGCTTTGAGGAGCGTGTGGCTT
CCACTTCTGCTGCCCTGCCAAGCTGCCTGCCCCCGGAAGTGCCCACGCAGCTGCCCGGACAACCTTTGCT
AGGGAAAGCCTGTCTAACATGA

Translation (543 aa):
MPLELTQSRVQKIWVPVDHRPSLPRSCGPKLTNSPTVIVMVGLPARGKTYISKKLTRYLNWIGVPTKVFN
VGEYRREAVKQYSSYNFFRPDNEEAMRVRKQCALAALRDVKSYLTKEGGQIAVFDATNTTRERRHMILNF
AKENDFKAFFIESVCDDPTVVASNIMEVKISSPDYKDCNSAEAMDDFMKRINCYEASYQPLDPDKCDRDL
SLIKVIDVGRRFLVNRVQDHIQSRIVYYLMNIHVQPRTIYLCRHGENEYNLQGKIGGDSGLSSRGKKFAN
ALSKFVEEQNLKDLRVWTSQLKSTIQTAEALRLPYEQWKALNEIDAGVCEELTYEEIRDTYPEEYALREQ
DKYYYRYPTGESYQDLVQRLEPVIMELERQENVLVICHQAVLRCLLAYFLDKSAEEMPYLKCPLHTVLKL
TPVAYGCRVESIYLNVESVSTHRERSEAVKIQHFASVVRPSSYTELDFQSVESAKQDAKKGPNPLMRRNS
VTPLASPEPTKKPRINSFEERVASTSAALPSCLPPEVPTQLPGQPLLGKACLT


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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