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Report for CCDS50598.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
50598.1 Public Mus musculus 2 4932414N04Rik 23 108 98 CCDS HistoryNCBI Gene:75721Re-query CCDS DB by CCDS ID:50598.1Re-query CCDS DB by GeneID:75721See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 50598.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000055930.5 ENSMUSP00000059809.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000055930.5Link to Ensembl Protein Viewer:ENSMUSP00000059809.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000055930Re-query CCDS DB by Protein ID:ENSMUSP00000059809
Original member Current member EBI ENSMUST00000128259.8 ENSMUSP00000135792.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000128259.8Link to Ensembl Protein Viewer:ENSMUSP00000135792.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000128259Re-query CCDS DB by Protein ID:ENSMUSP00000135792
Original member Current member NCBI NM_183113.3 NP_898936.1 Accepted alive Link to Nucleotide Sequence:NM_183113.3Link to Protein Sequence:NP_898936.1Re-query CCDS DB by Nucleotide ID:NM_183113Re-query CCDS DB by Protein ID:NP_898936Link to BLAST:NP_898936.1

Chromosomal Locations for CCDS 50598.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 68708937 68708938 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 68711021 68711054 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 68711376 68711499 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 68716136 68716349 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 68717122 68717293 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 68728991 68729061 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 68729485 68729602 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 68731066 68731250 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 68731951 68732158 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 68732844 68732959 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 68736503 68736629 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 68739313 68739527 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 68741368 68741587 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 68744234 68744445 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 68745377 68745587 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 68748340 68748369 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2259 nt):
ATGCTGACTAAGAAAACATCCAGTGAAAAGAATAAGGCTCTAAAGTACGCGGATGCTATGGATGACCACC
AG
TTATCCGAATCACTCTCTGAGGATTATGATTTGCCTGATTATGACAATATATTGATGATAGTTGACCA
A
CTTCAAATGAACTATAAAGATTCTGGAAAACCATTGGAAATCCAGGATGCGGTTCATTCATATAAAATG
ATA
GTAGAGCGTAACCAAAATCACTCGGAATTGCTTATCGAAAAAAGTAAGAACAAGAGAAACCAAGGTC
AC
AGGGTGATGAAGAAGCCAGGAGAAACAGAAAAAGCAAAACTGCAGCTCAGATGCAGACGTGAAGAGCA
G
CAACTAGATCTCCTCGATGTGGGATCGCCTGAAAAACAAGACATGCAGCAAAGAAATCCTGATGGTTGG
TAT
GAAGAAATGAAGAAAGAATTAACTGAAAAGGACCCACAACACGGAAGAGAAAAGCAACAACTTGAAC
TG
CGCCTTAGAGCACAGGATATGGAGCTGCAGCATCTCAGAAATGATATAAATAAGTTGCAAGAAGCACA
G
CATCCAGAGACAGAGGCTGGACATGGTGACAGCATGACGAAGGGACACCTGCAAAAGGTTGAACATGAA
GTT
TTCAAGTTAGTAGAAACCATCAAAAAGCAATCAGAGACCATAGAACAGCTTGAGAGAAAACTAGCAA
AT
GAAGATAAGATATTGACAGGAACTGGGCATCTGACACAAGCAGGACGAGATTTCTTTAATGCTTTCAG
A
GAAATGTATACTACTTCAGTAATGAGCCAGTTGGAACTCAGAATTCAACATCTGGAAAGGGAATTCTCT
GAA
ATGAAGACCCGAACATGGGAGAATGGTGTGGTGCTGGAAAACTATGTCAAACTTCATCAGTCACATA
AG
TTGATGGAGACTGAATCGAAGATGAAGGAGGTCATGTCCCAGTTTGCCATGCTGACTCAGCACAACAC
T
GCATTACTAAACTTGCTGAGCTCTGTGTTTGCCTCTGAGTGTCCCTGCAAGGGACGATCGAAAAGCCTC
TTT
ACCCAAGAGAACATGCTGACTTCCACTTCAGGCCCACAGCCCGCAAATCAGTCCATAATAGCCCACC
TG
GATGCGCCTGCGGATGACAATGAAGATTTCAATAAAGCACTCACCAAGTCGATTCTGTCTCCACAATC
T
GAGCTGCATCAAAAAAAGGAGAAATGTCTGGAATCAGCTGAAGAGAAAACTCTAAGGAAAAAACGTTTT
AAA
CCAACAAAAACATCAACTGTGTGTGAAAATGGAGAGCATAGTTTCTTTGAAGTTTCAAACACCAGGC
AA
TTTGAAAAGAATACTCCAGTTGATGAACCACAACATGAGATAATAAGAGAAGATCAAGAAACTCTTGA
T
AACATACCAGGGAACCACAATACCTTGATCATAAGCCCATGGGAATACAGATGTACAGATCTGGAATCT
GAA
CACTCAGAAGAAAGAACTCATCATGCCTTCTGTAAAGCTGAACCCGAACAGTATAAGGATCCCTGTC
TA
GAATGGGTACCAATCACACGTTCACCATCTCAAGGACAACTAAGGTCTAAGGACAGACAAGATGGGCC
C
ATAAGAAAGAACTTTAATAAAATGGAAGCTTATACTTCTACATCAAACGCATGCATGATGAGCTCTGGT
CCA
GAGTTTGGATCTGGACAGCTCTACAACAGTTTGGGATATAGCAGAAATTTCCTGCAAAGAGAACCCT
TG
ATGACAACCTCAAGACCACAGACCTTTGAGAATTCATTGAGCTTCCCAAACAGGGTAAGAGAAGAAAA
T
CAGCAAACTTCTTATGACAAAGTAGGACACCATAATGCCTCACGCATAAAGCCACAGAAAGCCACACTT
TCA
ACCCTACAGTCCAAACACCCAGAAGTAACTCATCAAGCCTCGTGTAAAGCAGAACCAAAACGCTATG
AG
GAGCCACATCCTGAAAGGATACAGATGACAAGCCCATTAACTTATGACCAACTCAAGTCTAAGGACAG
G
CAAGATGAGTCTGTGAGGAGGAACTTTGTTAAAATGGAGGCTTATAGTTCTGTGCTAAACACGTATACA
ACG
ACAAGCCCTGCTCCAGGGTTTGGATCTGGACAGTGCTGCAACAGTTTGGAACACAGCAGAAGTTTCA
CG
CCGCCAATCTCCAGGCCATGGCGTTTTGTGGAGAGTGTGGATAGCTACCTATGCAGGACATGGCAGCA
G
TTACACTACCACTATTAG


Translation (752 aa):
MLTKKTSSEKNKALKYADAMDDHQLSESLSEDYDLPDYDNILMIVDQLQMNYKDSGKPLEIQDAVHSYKM
I
VERNQNHSELLIEKSKNKRNQGHRVMKKPGETEKAKLQLRCRREEQQLDLLDV
GSPEKQDMQQRNPDGW
Y
EEMKKELTEKDPQHGREKQQLELRLRAQDMELQHLRNDINK
LQEAQHPETEAGHGDSMTKGHLQKVEHE
V
FKLVETIKKQSETIEQLERKLANEDKILTGTGHL
TQAGRDFFNAFREMYTTSVMSQLELRIQHLEREFS
E
MKTRTWENGVVLENYVKLHQSHKLM
ETESKMKEVMSQFAMLTQHNTALLNLLSSVFASECPCKGRSKSL
F
TQENMLTSTSGPQPANQSIIAHLDA
PADDNEDFNKALTKSILSPQSELHQKKEKCLESAEEKTLRKKRF
K
PTKTSTVCENGEHSFFEVSNTRQFEKNTPVDEPQHE
IIREDQETLDNIPGNHNTLIISPWEYRCTDLES
E
HSEERTHHAFCKAEPEQYKDPCLEWVPITRSPSQGQL
RSKDRQDGPIRKNFNKMEAYTSTSNACMMSSG
P
EFGSGQLYNSLGYSRNFLQREPLMTTSRPQTFENSLSFPNR
VREENQQTSYDKVGHHNASRIKPQKATL
S
TLQSKHPEVTHQASCKAEPKRYEEPHPERIQMTSPLTYDQL
KSKDRQDESVRRNFVKMEAYSSVLNTYT
T
TSPAPGFGSGQCCNSLEHSRSFTPPISRPWRFVESVDSYLCR
TWQQLHYHY



Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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