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Report for CCDS50722.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
50722.1 Public Mus musculus 2 Smox 23 108 98 CCDS HistoryNCBI Gene:228608Re-query CCDS DB by CCDS ID:50722.1Re-query CCDS DB by GeneID:228608See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 50722.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000110181.7 ENSMUSP00000105810.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000110181.7Link to Ensembl Protein Viewer:ENSMUSP00000105810.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000110181Re-query CCDS DB by Protein ID:ENSMUSP00000105810
Original member Current member NCBI NM_001177837.1 NP_001171308.1 Accepted alive Link to Nucleotide Sequence:NM_001177837.1Link to Protein Sequence:NP_001171308.1Re-query CCDS DB by Nucleotide ID:NM_001177837Re-query CCDS DB by Protein ID:NP_001171308Link to BLAST:NP_001171308.1

Chromosomal Locations for CCDS 50722.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 131512010 131512217 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 131516217 131516443 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 131520095 131520268 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 131520922 131521171 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 131522059 131522219 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 131524743 131524880 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1158 nt):
ATGCAAAGTTGTGAATCCAGTGGCGACAGTGCGGATGACCCTCTCAGTCGTGGCCTACGGAGAAGGGGAC
AG
CCTCGTGTGGTGGTGATCGGTGCTGGCTTGGCTGGCCTGGCTGCAGCTAGAGCCCTTCTGGAGCAGGG
C
TTCACGGATGTCACTGTGCTTGAGGCTTCCAGCCACATTGGGGGCCGTGTGCAGAGTGTGAGGCTTGGA
GAC
ACCACCTTTGAGCTGGGAGCCACCTGGATCCATGGATCCCACGGGAATCCTATCTATCAACTAGCAG
AA
GCCAATGGCCTTTTGGAAGAGACAACAGATGGGGAGCGCAGTGTGGGCCGCATCAGCCTTTACTCCAA
G
AATGGCGTGGCCTGCTACCTTACCAACCGTGGCTGCCGCATCCCCAAGGACGTGGTTGAGGAATTCAGC
GAT
TTATACAACGAGGTCTATAACATGACCCAGGAGTTCTTCCGGCATGGTAAACCAGTCAATGCCGAGA
GT
CAGAACAGCGTCGGGGTGTTCACCCGGGAGAAGGTGCGGAATCGCATCAGGGATGACCCTGACGACAC
A
GAGGCCACCAAGCGCCTGAAGCTCGCCATGATCCAGCAGTACCTGAAGGAGCCCTTTTGGGGCCCCGAG
TGC
AACAGCCTGCAGTTCGTGTGGGAGGATGAGGCAGAGAGCTGTACCCTCACCTACCCACCTGAGCTCT
GG
TACCGCAAGATCTGTGGCTTCGATGTCCTTTATCCGCCAGAGCGCTATGGCCATGTGCTGAGTGGCTG
G
ATCTGTGGGGAGGAGGCTCTTGTCATGGAGAGGTGCGATGACGAGGCTGTAGCTGAGATCTGCACAGAG
ATG
CTTCGACAGTTCACAGGGAACCCCAATATACCAAAACCTAGGCGAATCCTGCGCTCAGCCTGGGGCA
GC
AACCCATACTTCCGGGGTTCCTATTCCTACACACAGGTGGGCTCAAGTGGGGCGGATGTGGAGAAGCT
A
GCCAAGCCCCTGCCCTACACAGAGAGCTCCAAGACAGCGCCCATGCAGGTGCTCTTCTCCGGGGAGGCC
ACA
CACCGCAAGTACTACTCCACCACCCACGGTGCTCTGCTCTCTGGCCAGCGCGAGGCCGCCCGGCTCA
TC
GAGATGTACCGAGACCTCTTCCAGCAGGGGCCCTGA


Translation (385 aa):
MQSCESSGDSADDPLSRGLRRRGQPRVVVIGAGLAGLAAARALLEQGFTDVTVLEASSHIGGRVQSVRLG
D
TTFELGATWIHGSHGNPIYQLAEANGLLEETTDGERSVGRISLYSKNGVACYLTNRGCRIPKDVVEEFS
D
LYNE
VYNMTQEFFRHGKPVNAESQNSVGVFTREKVRNRIRDDPDDTEATKRLKLAMIQQYLKEPFWGPE
C
NSLQFVWEDEAESCTLTYPPELWYRKICGFDVLYPPERYGHVLSGWICGEEALVMERCDDEAVAEICTE
M
LRQFT
GNPNIPKPRRILRSAWGSNPYFRGSYSYTQVGSSGADVEKLAKPLPYTESSKTAPMQVLFSGEA
T
HRKYYSTTHGALLSGQREAARLIEMYRDLFQQGP




Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
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