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Report for CCDS50803.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
50803.1 Public Mus musculus 2 Nfatc2 23 108 98 CCDS HistoryNCBI Gene:18019Re-query CCDS DB by CCDS ID:50803.1Re-query CCDS DB by GeneID:18019See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 50803.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000109184.7 ENSMUSP00000104812.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000109184.7Link to Ensembl Protein Viewer:ENSMUSP00000104812.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000109184Re-query CCDS DB by Protein ID:ENSMUSP00000104812
Original member Current member NCBI NM_001136073.2 NP_001129545.1 Accepted alive Link to Nucleotide Sequence:NM_001136073.2Link to Protein Sequence:NP_001129545.1Re-query CCDS DB by Nucleotide ID:NM_001136073Re-query CCDS DB by Protein ID:NP_001129545Link to BLAST:NP_001129545.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001129545.1 923 Q60591-2 923 100% 0 0

Chromosomal Locations for CCDS 50803.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 168486728 168486771 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 168504445 168505134 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 168506868 168506994 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 168507315 168507370 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 168523238 168523378 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 168534918 168535090 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 168536203 168536405 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 168567139 168567310 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 168570598 168571633 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 168590062 168590191 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2772 nt):
ATGGACGTCCCGGAGCCGCAGCCCGACCCCGATGGCGGGGACGGCCCCGGCCACGAGCCCGGGGGCAGTC
CCCAAGACGAGCTGGACTTTTCCATCCTCTTCGATTATGACTATCTGAACCCTATCGAAGAAGAACCGAT
CGCACATAAGGCCATCAGCTCACCCTCCGGACTCGCATACCCGGATGATGTCCTGGACTATGGCCTCAAG
CCATGCAACCCCCTTGCCAGTCTCTCTGGCGAGCCCCCTGGCCGGTTCGGAGAGCCGGATAGTATAGGGT
TCCAGAACTTTCTGAGCCCGGTCAAGCCAGCAGGGGCTTCGGGCCCGAGCCCTCGGATCGAGATCACTCC
ATCCCACGAACTGATGCAGGCAGGGGGGGCCCTCCGTGGGAGAGACGCCGGCCTGTCCCCCGAGCAGCCG
GCCCTGGCCCTGGCCGGCGTGGCCGCCAGCCCGAGGTTCACACTGCCCGTGCCCGGCTACGAGGGCTACC
GCGAGCCGCTTTGCTTGAGCCCCGCTAGCAGCGGCTCCTCTGCCAGCTTCATTTCTGACACCTTCTCCCC
CTACACCTCGCCCTGCGTCTCACCCAATAACGCCGGGCCCGACGACCTGTGTCCCCAGTTTCAAAACATC
CCTGCTCATTATTCCCCCAGAACCTCTCCAATAATGTCACCTCGAACCAGCCTCGCCGAGGACAGCTGCC
TGGGCCGACACTCGCCCGTGCCCCGTCCGGCATCCCGCTCCTCCTCACCCGGTGCCAAGCGGAGGCATTC
GTGCGCAGAGGCTTTGGTTGCTCCTCTGCCCGCAGCCTCACCCCAGCGCTCCCGGAGCCCCTCGCCACAG
CCCTCGCCTCACGTGGCACTGCAGGACGACAGCATCCCCGCTGGGTACCCCCCCACGGCCGGCTCTGCTG
TTCTCATGGATGCCCTCAACACCCTGGCCACCGACTCGCCCTGCGGGATCCCCTCCAAGATATGGAAGAC
CAGTCCTGACCCGACGCCTGTGTCCACCGCTCCGTCCAAGGCTGGCCTGGCCCGCCACATCTACCCTACT
GTGGAGTTCCTGGGGCCATGTGAGCAGGAGGAGAGGAGGAATTCCGCTCCAGAGTCCATCCTGCTGGTAC
CACCTACTTGGCCCAAGCAGTTGGTGCCGGCCATTCCCATCTGCAGCATCCCTGTGACTGCATCCCTCCC
ACCACTCGAGTGGCCACTCTCCAATCAGTCGGGCTCCTATGAGCTACGGATTGAGGTCCAACCCAAGCCC
CATCACCGGGCCCACTATGAGACGGAGGGCAGCCGTGGCGCTGTCAAAGCCCCAACAGGAGGACACCCTG
TGGTGCAGCTCCACGGCTACATGGAGAACAAGCCTCTGGGGCTTCAGATCTTCATTGGGACAGCAGATGA
GAGGATCCTTAAGCCGCACGCCTTCTACCAAGTACACAGGATCACTGGGAAAACGGTCACCACCACGAGC
TATGAGAAGATCGTAGGCAACACCAAGGTCCTGGAGATCCCCCTGGAGCCAAAGAACAACATGAGAGCCA
CCATCGACTGTGCAGGCATCCTGAAGCTCCGAAACGCTGACATCGAGCTGCGGAAGGGCGAGACGGACAT
CGGCAGGAAGAACACGCGTGTGCGCCTGGTGTTCCGCGTGCACGTCCCAGAGCCCAGTGGGCGCATCGTC
TCCCTGCAGGCTGCGTCCAACCCCATCGAGTGCTCTCAGCGCTCTGCCCACGAGCTGCCCATGGTGGAGA
GACAAGACATGGACAGCTGCCTGGTCTACGGGGGCCAGCAGATGATCCTCACGGGCCAGAACTTCACAGC
GGAGTCCAAGGTTGTGTTCATGGAGAAGACTACAGATGGGCAGCAGATTTGGGAGATGGAAGCTACGGTG
GATAAAGACAAGAGCCAGCCTAACATGCTTTTTGTTGAGATCCCCGAGTATCGGAACAAGCACATCCGCG
TGCCCGTGAAAGTCAACTTCTACGTCATCAACGGAAAGAGGAAACGAAGTCAGCCACAGCACTTTACCTA
CCACCCAGTCCCTGCCATCAAGACAGAGCCCAGCGATGAGTATGAACCATCTTTGATCTGCAGCCCCGCC
CATGGAGGCCTGGGGAGCCAGCCATATTACCCACAGCACCCAATGCTGGCCGAGTCCCCCTCCTGCCTTG
TGGCTACCATGGCCCCCTGCCAACAGTTCCGCTCGGGGCTCTCATCCCCCGATGCTCGCTACCAACAGCA
GAGCCCCGCAGCTGCCCTCTACCAGAGAAGCAAGAGCCTGAGTCCCGGCCTGCTGGGCTACCAGCAGCCG
TCCCTCCTGGCAGCACCCTTGGGTCTGGCTGATGCCCACCGCTCTGTGCTGGTGCATGCTGGTTCTCAGG
GGCAGGGGCAGGGCTCCACCCTGCCACACACATCCTCGGCCAGCCAGCAGGCCTCACCCGTGATCCACTA
CTCACCCACCAACCAGCAGCTTCGCGGTGGGGGTCACCAGGAGTTCCAGCATATCATGTACTGTGAAAAC
TTCGGCCCCAGCTCTGCCAGGCCTGGCCCGCCTCCCATCAACCAAGGTCAGAGGCTGAGCCCGGGCGCCT
ACCCCACAGTCATCCAACAACAGACTGCCCCGAGCCAAAGAGCTGCCAAAAACGGACCCAGTGACCAGAA
GGAAGCTCTGCCCACGGGAGTGACCGTCAAACAGGAACAGAACCTGGACCAGACCTACCTGGATGACGAG
TTGATAGACACACACCTTAGCTGGATACAAAACATATTATGA

Translation (923 aa):
MDVPEPQPDPDGGDGPGHEPGGSPQDELDFSILFDYDYLNPIEEEPIAHKAISSPSGLAYPDDVLDYGLK
PCNPLASLSGEPPGRFGEPDSIGFQNFLSPVKPAGASGPSPRIEITPSHELMQAGGALRGRDAGLSPEQP
ALALAGVAASPRFTLPVPGYEGYREPLCLSPASSGSSASFISDTFSPYTSPCVSPNNAGPDDLCPQFQNI
PAHYSPRTSPIMSPRTSLAEDSCLGRHSPVPRPASRSSSPGAKRRHSCAEALVAPLPAASPQRSRSPSPQ
PSPHVALQDDSIPAGYPPTAGSAVLMDALNTLATDSPCGIPSKIWKTSPDPTPVSTAPSKAGLARHIYPT
VEFLGPCEQEERRNSAPESILLVPPTWPKQLVPAIPICSIPVTASLPPLEWPLSNQSGSYELRIEVQPKP
HHRAHYETEGSRGAVKAPTGGHPVVQLHGYMENKPLGLQIFIGTADERILKPHAFYQVHRITGKTVTTTS
YEKIVGNTKVLEIPLEPKNNMRATIDCAGILKLRNADIELRKGETDIGRKNTRVRLVFRVHVPEPSGRIV
SLQAASNPIECSQRSAHELPMVERQDMDSCLVYGGQQMILTGQNFTAESKVVFMEKTTDGQQIWEMEATV
DKDKSQPNMLFVEIPEYRNKHIRVPVKVNFYVINGKRKRSQPQHFTYHPVPAIKTEPSDEYEPSLICSPA
HGGLGSQPYYPQHPMLAESPSCLVATMAPCQQFRSGLSSPDARYQQQSPAAALYQRSKSLSPGLLGYQQP
SLLAAPLGLADAHRSVLVHAGSQGQGQGSTLPHTSSASQQASPVIHYSPTNQQLRGGGHQEFQHIMYCEN
FGPSSARPGPPPINQGQRLSPGAYPTVIQQQTAPSQRAAKNGPSDQKEALPTGVTVKQEQNLDQTYLDDE
LIDTHLSWIQNIL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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