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Report for CCDS50880.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
50880.1 Public Mus musculus 3 Slc2a2 23 108 98 CCDS HistoryNCBI Gene:20526Re-query CCDS DB by CCDS ID:50880.1Re-query CCDS DB by GeneID:20526See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 50880.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000029240.13 ENSMUSP00000029240.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000029240.13Link to Ensembl Protein Viewer:ENSMUSP00000029240.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000029240Re-query CCDS DB by Protein ID:ENSMUSP00000029240
Original member Current member NCBI NM_031197.2 NP_112474.2 Accepted alive Link to Nucleotide Sequence:NM_031197.2Link to Protein Sequence:NP_112474.2Re-query CCDS DB by Nucleotide ID:NM_031197Re-query CCDS DB by Protein ID:NP_112474Link to BLAST:NP_112474.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_112474.2 523 P14246 523 100% 0 0

Chromosomal Locations for CCDS 50880.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 3 (NC_000069.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 28698017 28698031 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 28705730 28705822 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 28708418 28708677 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 28713693 28713817 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 28717416 28717531 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 28718669 28718831 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 28719320 28719507 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 28721703 28721807 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 28726231 28726332 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 28726982 28727185 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 28727276 28727476 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1572 nt):
ATGTCAGAAGACAAGATCACCGGAACCTTGGCTTTCACTGTCTTCACTGCTGTACTGAGTTCCTTCCAGT
TCGGCTATGACATCGGTGTGATCAATGCACCTCAAGAGGTAATAATATCCCATTATCGACATGTTTTGGG
TGTTCCACTGGATGACCGGAAAGCTGCCATTAACTATGACGTCAATGGCACAGACACCCCACTTACAGTC
ACACCAGCATACACAACACCAGCTCCCTGGGATGAAGAGGAGACTGAAGGATCTGCTCACATAGTCACTA
TGCTCTGGTCTCTGTCTGTGTCCAGCTTTGCAGTGGGCGGAATGGTCGCCTCATTCTTTGGTGGGTGGCT
CGGGGACAAACTTGGAAGGATCAAAGCAATGTTGGCTGCAAACAGCCTCTCATTGACTGGAGCCCTCTTG
ATGGGATGTTCCAAATTTGGACCGGCACACGCCCTCATCATTGCTGGACGAAGTGTATCAGGACTGTATT
GTGGGCTAATTTCAGGACTGGTTCCAATGTACATTGGAGAGATCGCTCCAACCACACTCAGGGGTGCCCT
GGGTACTCTTCACCAACTGGCCCTTGTCACAGGCATTCTTATTAGTCAGATTGCTGGCCTCAGCTTTATT
CTGGGCAATCAGGATCATTGGCACATCCTACTTGGCCTATCTGCTGTGCCAGCTCTTCTGCAGTGTCTGC
TACTGCTCTTCTGTCCAGAAAGCCCCAGATACCTTTATATAAAGTTGGAAGAGGAAGTCAGGGCAAAGAA
AAGCTTGAAGAGACTAAGAGGAACTGAGGATGTCACCAAAGATATTAATGAGATGAAGAAAGAAAAGGAA
GAGGCATCGACTGAGCAGAAGGTCTCCGTGATCCAGCTCTTCACGGATGCCAATTACCGACAGCCCATCC
TCGTGGCGCTGATGCTGCACATGGCCCAGCAGTTCTCAGGAATCAATGGGATATTTTACTATTCAACCAG
CATTTTTCAGACAGCTGGCATCAGCCAGCCTGTGTATGCAACCATTGGTGTTGGGGCCATCAACATGATC
TTCACGGCTGTCTCTGTGCTGCTTGTGGAGAAGGCAGGGCGGCGGACCCTGTTCCTAACCGGGATGATTG
GCATGTTTTTCTGCACCATCTTCATGTCGGTGGGACTTGTGCTGCTGGATAAATTCGCCTGGATGAGTTA
CGTGAGCATGACTGCCATCTTCCTCTTTGTCAGTTTCTTTGAGATTGGGCCAGGTCCAATCCCTTGGTTC
ATGGTTGCTGAATTTTTCAGCCAAGGACCCCGTCCTACGGCTCTGGCACTGGCTGCCTTCAGCAACTGGG
TCTGCAATTTTGTCATCGCCCTCTGCTTCCAGTACATTGCGGACTTCCTTGGGCCTTACGTGTTCTTCCT
CTTCGCTGGGGTGGTCCTGGTCTTCACCCTGTTTACATTCTTTAAAGTTCCAGAAACCAAAGGAAAGTCT
TTTGAGGAAATCGCTGCAGAATTCCGGAAGAAGAGTGGTTCGGCCCCACCACGCAAAGCTGCTGTACAAA
TGGAATTCCTGGCGTCTTCAGAGAGTGTGTGA

Translation (523 aa):
MSEDKITGTLAFTVFTAVLSSFQFGYDIGVINAPQEVIISHYRHVLGVPLDDRKAAINYDVNGTDTPLTV
TPAYTTPAPWDEEETEGSAHIVTMLWSLSVSSFAVGGMVASFFGGWLGDKLGRIKAMLAANSLSLTGALL
MGCSKFGPAHALIIAGRSVSGLYCGLISGLVPMYIGEIAPTTLRGALGTLHQLALVTGILISQIAGLSFI
LGNQDHWHILLGLSAVPALLQCLLLLFCPESPRYLYIKLEEEVRAKKSLKRLRGTEDVTKDINEMKKEKE
EASTEQKVSVIQLFTDANYRQPILVALMLHMAQQFSGINGIFYYSTSIFQTAGISQPVYATIGVGAINMI
FTAVSVLLVEKAGRRTLFLTGMIGMFFCTIFMSVGLVLLDKFAWMSYVSMTAIFLFVSFFEIGPGPIPWF
MVAEFFSQGPRPTALALAAFSNWVCNFVIALCFQYIADFLGPYVFFLFAGVVLVFTLFTFFKVPETKGKS
FEEIAAEFRKKSGSAPPRKAAVQMEFLASSESV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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