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Report for CCDS50992.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
50992.1 Public Mus musculus 3 Ctss 23 108 98 CCDS HistoryNCBI Gene:13040Re-query CCDS DB by CCDS ID:50992.1Re-query CCDS DB by GeneID:13040See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by CCDS collaboration)


Attributes
CDS uses downstream AUG

Sequence IDs included in CCDS 50992.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000116304.2 ENSMUSP00000112006.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000116304.2Link to Ensembl Protein Viewer:ENSMUSP00000112006.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000116304Re-query CCDS DB by Protein ID:ENSMUSP00000112006
Original member Current member NCBI NM_021281.3 NP_067256.4 Accepted alive Link to Nucleotide Sequence:NM_021281.3Link to Protein Sequence:NP_067256.4Re-query CCDS DB by Nucleotide ID:NM_021281Re-query CCDS DB by Protein ID:NP_067256Link to BLAST:NP_067256.4

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_067256.4 340 O70370 340 100% 0 0

Chromosomal Locations for CCDS 50992.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 3 (NC_000069.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 95526900 95526925 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 95529437 95529560 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 95538721 95538843 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 95543013 95543162 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 95545333 95545563 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 95546796 95546961 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 95550053 95550155 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 95556086 95556185 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1023 nt):
ATGAGGGCTCCTGGCCACGCTGCCATAAGATGGCTGTTTTGGATGCCCCTGGTGTGCTCTGTGGCAATGG
AGCAACTGCAGAGAGACCCTACCCTGGACTACCATTGGGATCTCTGGAAGAAAACCCATGAGAAAGAATA
CAAGGATAAGAATGAAGAAGAAGTACGGCGTCTCATCTGGGAAAAGAATCTGAAGTTTATAATGATTCAC
AATCTCGAATATTCTATGGGAATGCATACCTACCAAGTGGGCATGAACGATATGGGAGACATGACCAATG
AAGAAATCTTGTGTCGGATGGGTGCTCTGAGAATTCCCCGACAGTCTCCGAAGACTGTCACTTTCAGGTC
ATACTCTAATCGGACATTGCCTGACACTGTGGACTGGAGAGAGAAGGGCTGCGTCACTGAGGTGAAATAC
CAGGGTTCTTGTGGTGCCTGCTGGGCTTTCAGTGCTGTGGGGGCCCTTGAAGGGCAGCTGAAGCTGAAAA
CGGGGAAGCTGATATCCCTCAGTGCTCAGAACCTGGTGGACTGCTCAAATGAAGAAAAGTATGGGAATAA
AGGCTGTGGAGGCGGCTACATGACCGAAGCTTTCCAGTACATCATTGATAATGGGGGCATAGAGGCAGAC
GCTTCCTATCCCTACAAAGCCACGGATGAAAAGTGTCACTATAACTCAAAAAATCGAGCTGCCACGTGTT
CAAGGTACATTCAGCTCCCGTTTGGTGACGAGGATGCCCTGAAAGAAGCAGTGGCCACTAAAGGGCCTGT
CTCTGTGGGCATCGACGCCAGCCATTCCTCCTTCTTCTTCTACAAAAGCGGTGTCTATGACGACCCCTCC
TGTACGGGCAATGTGAATCATGGTGTTCTTGTGGTTGGCTATGGGACTCTTGATGGCAAAGATTACTGGC
TTGTGAAAAACAGTTGGGGCCTTAACTTTGGTGATCAAGGATACATTCGGATGGCAAGAAATAATAAAAA
TCACTGCGGAATTGCTAGTTATTGCTCTTACCCAGAAATCTAA

Translation (340 aa):
MRAPGHAAIRWLFWMPLVCSVAMEQLQRDPTLDYHWDLWKKTHEKEYKDKNEEEVRRLIWEKNLKFIMIH
NLEYSMGMHTYQVGMNDMGDMTNEEILCRMGALRIPRQSPKTVTFRSYSNRTLPDTVDWREKGCVTEVKY
QGSCGACWAFSAVGALEGQLKLKTGKLISLSAQNLVDCSNEEKYGNKGCGGGYMTEAFQYIIDNGGIEAD
ASYPYKATDEKCHYNSKNRAATCSRYIQLPFGDEDALKEAVATKGPVSVGIDASHSSFFFYKSGVYDDPS
CTGNVNHGVLVVGYGTLDGKDYWLVKNSWGLNFGDQGYIRMARNNKNHCGIASYCSYPEI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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