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Report for CCDS5107.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
5107.1 Public Homo sapiens 6 DSE 24 110 108 CCDS HistoryNCBI Gene:29940Re-query CCDS DB by CCDS ID:5107.1Re-query CCDS DB by GeneID:29940See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 5107.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000331677.7 ENSP00000332151.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000331677.7Link to Ensembl Protein Viewer:ENSP00000332151.2Re-query CCDS DB by Nucleotide ID:ENST00000331677Re-query CCDS DB by Protein ID:ENSP00000332151
Original member Current member EBI ENST00000452085.7 ENSP00000404049.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000452085.7Link to Ensembl Protein Viewer:ENSP00000404049.2Re-query CCDS DB by Nucleotide ID:ENST00000452085Re-query CCDS DB by Protein ID:ENSP00000404049
Original member Current member EBI ENST00000644252.3 ENSP00000494147.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000644252.3Link to Ensembl Protein Viewer:ENSP00000494147.2Re-query CCDS DB by Nucleotide ID:ENST00000644252Re-query CCDS DB by Protein ID:ENSP00000494147
Original member Current member NCBI NM_001080976.3 NP_001074445.1 Accepted alive Link to Nucleotide Sequence:NM_001080976.3Link to Protein Sequence:NP_001074445.1Re-query CCDS DB by Nucleotide ID:NM_001080976Re-query CCDS DB by Protein ID:NP_001074445Link to BLAST:NP_001074445.1
Original member Current member NCBI NM_001322937.2 NP_001309866.1 Accepted alive Link to Nucleotide Sequence:NM_001322937.2Link to Protein Sequence:NP_001309866.1Re-query CCDS DB by Nucleotide ID:NM_001322937Re-query CCDS DB by Protein ID:NP_001309866Link to BLAST:NP_001309866.1
Original member Current member NCBI NM_001322938.2 NP_001309867.1 Accepted alive Link to Nucleotide Sequence:NM_001322938.2Link to Protein Sequence:NP_001309867.1Re-query CCDS DB by Nucleotide ID:NM_001322938Re-query CCDS DB by Protein ID:NP_001309867Link to BLAST:NP_001309867.1
Original member Current member NCBI NM_013352.4 NP_037484.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_013352.4Link to Protein Sequence:NP_037484.1Re-query CCDS DB by Nucleotide ID:NM_013352Re-query CCDS DB by Protein ID:NP_037484Link to BLAST:NP_037484.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001074445.1 958 Q9UL01 958 100% 0 0
NP_001309866.1 958 Q9UL01 958 100% 0 0
NP_001309867.1 958 Q9UL01 958 100% 0 0
NP_037484.1 958 Q9UL01 958 100% 0 0

Chromosomal Locations for CCDS 5107.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 6 (NC_000006.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 116399251 116399666 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 116426574 116426827 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 116430954 116431193 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 116433343 116433550 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 116435587 116437345 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2877 nt):
ATGAGGACTCACACACGGGGGGCTCCCAGTGTGTTTTTCATATATTTGCTTTGCTTTGTGTCAGCCTACA
TCACCGACGAGAACCCAGAAGTTATGATTCCCTTCACCAATGCCAACTACGACAGCCATCCCATGCTGTA
CTTCTCCAGGGCAGAAGTGGCGGAGCTGCAGCTCAGGGCTGCCAGCTCGCACGAGCACATTGCAGCCCGC
CTCACGGAGGCTGTGCACACGATGCTGTCCAGCCCCTTGGAATACCTCCCTCCCTGGGATCCCAAGGACT
ACAGTGCCCGCTGGAATGAAATTTTTGGAAACAACTTGGGTGCCTTGGCAATGTTCTGTGTGCTGTATCC
TGAGAACATTGAAGCCCGAGACATGGCCAAAGACTACATGGAGAGGATGGCAGCGCAGCCTAGTTGGTTG
GTGAAAGATGCTCCTTGGGATGAGGTCCCGCTTGCTCACTCCCTGGTTGGTTTTGCCACTGCTTATGACT
TCTTGTACAACTACCTGAGCAAGACACAACAGGAGAAGTTTCTTGAAGTGATTGCCAATGCCTCAGGGTA
TATGTATGAAACTTCATACAGGAGAGGATGGGGATTTCAATACCTGCACAATCATCAGCCCACCAACTGT
ATGGCTTTGCTCACGGGAAGCCTAGTCCTGATGAATCAAGGATATCTTCAAGAAGCCTACTTATGGACCA
AACAAGTTCTGACCATCATGGAGAAATCTCTGGTCTTGCTCAGGGAGGTGACGGATGGCTCCCTCTATGA
AGGAGTTGCGTATGGCAGCTACACCACTAGATCACTCTTCCAATACATGTTTCTCGTCCAGAGGCACTTC
AACATCAACCACTTTGGCCATCCGTGGCTTAAACAACACTTTGCATTTATGTATAGAACCATCCTGCCAG
GGTTTCAAAGGACTGTGGCTATTGCGGACTCAAATTACAACTGGTTTTATGGTCCAGAAAGCCAATTAGT
GTTCCTTGATAAATTTGTCATGCGTAATGGCAGTGGTAACTGGCTAGCTGACCAAATCAGAAGGAACCGT
GTGGTGGAAGGTCCAGGAACACCATCCAAAGGGCAGCGCTGGTGCACTCTGCACACAGAATTTCTCTGGT
ATGATGGCAGCTTGAAATCGGTTCCTCCTCCAGACTTTGGCACCCCTACACTGCATTATTTTGAAGACTG
GGGTGTCGTGACTTATGGAAGTGCACTACCTGCAGAAATCAATAGATCTTTCCTTTCCTTCAAGTCTGGA
AAACTGGGGGGACGTGCAATATATGACATTGTCCACAGAAACAAATACAAAGATTGGATCAAAGGATGGA
GAAATTTTAATGCAGGGCATGAACATCCTGATCAAAACTCATTTACTTTTGCTCCCAATGGTGTGCCTTT
CATTACTGAGGCTCTGTACGGGCCAAAGTACACCTTCTTCAACAATGTTTTGATGTTTTCCCCAGCTGTG
TCAAAGAGCTGCTTTTCTCCCTGGGTGGGTCAGGTCACAGAAGACTGCTCATCAAAATGGTCTAAATACA
AGCATGACCTGGCAGCTAGTTGTCAGGGGAGGGTGGTTGCAGCAGAGGAGAAAAATGGGGTGGTTTTCAT
CCGAGGAGAAGGTGTGGGAGCTTATAACCCCCAGCTCAACCTGAAGAATGTTCAGAGGAATCTCATCCTC
CTACATCCACAGCTGCTTCTCCTTGTAGACCAAATACACCTGGGAGAGGAGAGTCCCTTGGAGACAGCAG
CGAGCTTCTTCCATAATGTGGATGTTCCTTTTGAGGAGACTGTGGTAGATGGTGTCCATGGGGCTTTCAT
CAGGCAGAGAGATGGTCTCTATAAAATGTACTGGATGGACGATACTGGCTACAGCGAGAAAGCAACCTTT
GCCTCAGTGACATATCCTCGGGGCTATCCCTACAATGGGACAAACTATGTGAATGTCACCATGCACCTCC
GAAGTCCCATCACCAGGGCAGCTTACCTCTTCATAGGGCCATCTATAGATGTTCAGAGCTTCACTGTCCA
CGGAGACTCTCAGCAACTGGATGTGTTCATAGCCACCAGCAAACATGCCTACGCCACATACCTGTGGACA
GGTGAGGCCACAGGACAGTCTGCCTTTGCACAGGTCATTGCTGATCGTCACAAAATTCTGTTTGACCGGA
ATTCAGCCATCAAGAGCAGCATTGTCCCTGAGGTGAAGGACTATGCTGCTATTGTGGAACAGAACTTGCA
GCATTTTAAACCAGTGTTTCAGCTGCTGGAGAAGCAGATACTGTCCCGAGTCCGGAACACAGCTAGCTTT
AGGAAGACTGCTGAACGCCTGCTGAGATTTTCAGATAAGAGACAGACTGAGGAGGCCATTGACAGGATTT
TTGCCATATCACAGCAACAGCAGCAGCAAAGCAAGTCAAAGAAAAACCGAAGGGCAGGCAAACGCTATAA
ATTTGTGGATGCTGTCCCTGATATTTTTGCACAGATTGAAGTCAATGAGAAAAAGATTAGACAGAAAGCT
CAGATTTTGGCACAGAAAGAACTACCCATAGATGAAGATGAAGAAATGAAAGACCTTTTAGATTTTGCAG
ATGTAACATACGAGAAACATAAAAATGGGGGCTTGATTAAAGGCCGGTTTGGACAGGCACGGATGGTGAC
AACTACACACAGCAGGGCCCCATCACTGTCTGCTTCCTATACCAGGTTGTTCCTGATTCTGAACATTGCT
ATTTTCTTTGTCATGTTGGCAATGCAACTGACTTATTTCCAGAGGGCCCAGAGCCTACATGGCCAAAGAT
GTCTTTATGCAGTTCTTCTCATAGATAGCTGTATTTTATTATGGTTGTACTCTTCTTGTTCCCAATCACA
GTGTTAG

Translation (958 aa):
MRTHTRGAPSVFFIYLLCFVSAYITDENPEVMIPFTNANYDSHPMLYFSRAEVAELQLRAASSHEHIAAR
LTEAVHTMLSSPLEYLPPWDPKDYSARWNEIFGNNLGALAMFCVLYPENIEARDMAKDYMERMAAQPSWL
VKDAPWDEVPLAHSLVGFATAYDFLYNYLSKTQQEKFLEVIANASGYMYETSYRRGWGFQYLHNHQPTNC
MALLTGSLVLMNQGYLQEAYLWTKQVLTIMEKSLVLLREVTDGSLYEGVAYGSYTTRSLFQYMFLVQRHF
NINHFGHPWLKQHFAFMYRTILPGFQRTVAIADSNYNWFYGPESQLVFLDKFVMRNGSGNWLADQIRRNR
VVEGPGTPSKGQRWCTLHTEFLWYDGSLKSVPPPDFGTPTLHYFEDWGVVTYGSALPAEINRSFLSFKSG
KLGGRAIYDIVHRNKYKDWIKGWRNFNAGHEHPDQNSFTFAPNGVPFITEALYGPKYTFFNNVLMFSPAV
SKSCFSPWVGQVTEDCSSKWSKYKHDLAASCQGRVVAAEEKNGVVFIRGEGVGAYNPQLNLKNVQRNLIL
LHPQLLLLVDQIHLGEESPLETAASFFHNVDVPFEETVVDGVHGAFIRQRDGLYKMYWMDDTGYSEKATF
ASVTYPRGYPYNGTNYVNVTMHLRSPITRAAYLFIGPSIDVQSFTVHGDSQQLDVFIATSKHAYATYLWT
GEATGQSAFAQVIADRHKILFDRNSAIKSSIVPEVKDYAAIVEQNLQHFKPVFQLLEKQILSRVRNTASF
RKTAERLLRFSDKRQTEEAIDRIFAISQQQQQQSKSKKNRRAGKRYKFVDAVPDIFAQIEVNEKKIRQKA
QILAQKELPIDEDEEMKDLLDFADVTYEKHKNGGLIKGRFGQARMVTTTHSRAPSLSASYTRLFLILNIA
IFFVMLAMQLTYFQRAQSLHGQRCLYAVLLIDSCILLWLYSSCSQSQC


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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