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Report for CCDS51494.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
51494.1 Public Mus musculus 5 Prom1 23 108 98 CCDS HistoryNCBI Gene:19126Re-query CCDS DB by CCDS ID:51494.1Re-query CCDS DB by GeneID:19126See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 51494.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000074113.12 ENSMUSP00000073751.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000074113.12Link to Ensembl Protein Viewer:ENSMUSP00000073751.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000074113Re-query CCDS DB by Protein ID:ENSMUSP00000073751
Original member Current member NCBI NM_001163577.1 NP_001157049.1 Accepted alive Link to Nucleotide Sequence:NM_001163577.1Link to Protein Sequence:NP_001157049.1Re-query CCDS DB by Nucleotide ID:NM_001163577Re-query CCDS DB by Protein ID:NP_001157049Link to BLAST:NP_001157049.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001157049.1 867 O54990-1 867 99.654% 0 3

Chromosomal Locations for CCDS 51494.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 43995099 43995114 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 44000777 44000845 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 44001270 44001293 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 44001786 44001901 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 44004886 44004978 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 44006165 44006233 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 44007023 44007103 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 44011195 44011248 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 44012876 44012968 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 44014096 44014167 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 44014758 44014904 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 44016566 44016650 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 44018293 44018396 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 44020808 44020931 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 44026683 44026835 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 44029610 44029769 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 44032944 44033007 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 44034347 44034421 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 44037424 44037641 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 44044317 44044406 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 44045520 44045583 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 44047498 44047618 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 44055878 44056083 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 44058626 44058652 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 44063126 44063184 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 44094395 44094614 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2604 nt):
ATGGCTCTCGTCTTCAGTGCCCTGCTGTTACTGGGGCTGTGTGGAAAGATCTCTTCAGAAGGTCAGCCTG
CATTCCATAACACTCCTGGGGCTATGAATTATGAATTGCCTACCACCAAATATGAGACCCAAGATACCTT
CAATGCTGGGATTGTTGGCCCTCTCTACAAAATGGTGCACATCTTCCTCAACGTGGTCCAGCCGAATGAC
TTCCCTCTAGATTTGATCAAAAAACTCATACAGAACAAGAACTTTGACATCTCAGTTGATTCCAAGGAGC
CAGAAATCATAGTCTTGGCTCTGAAGATTGCCCTCTATGAGATCGGAGTCCTTATCTGCGCCATCCTGGG
ACTGCTGTTCATTATCCTCATGCCTCTGGTGGGCTGCTTCTTTTGTATGTGCCGTTGCTGCAACAAATGC
GGCGGAGAGATGCACCAGCGGCAGAAGCAGAATGCGCCATGCAGGAGGAAGTGCTTGGGCCTCTCCCTCC
TGGTGATTTGTCTGCTCATGAGCCTTGGCATTATATATGGCTTTGTGGCTAACCAGCAGACCAGGACTCG
GATCAAAGGGACCCAGAAACTGGCAAAGAGCAATTTCAGAGACTTTCAAACACTCCTGACTGAAACACCA
AAGCAAATTGACTATGTAGTGGAGCAGTACACCAACACCAAGAACAAGGCATTCTCAGACCTGGATGGCA
TCGGCTCCGTGCTGGGAGGCAGAATAAAGGACCAACTAAAACCCAAAGTAACTCCTGTCCTCGAAGAGAT
TAAGGCCATGGCGACAGCCATCAAACAGACCAAGGATGCCCTGCAGAACATGAGCAGCAGCCTGAAAAGT
CTCCAAGATGCAGCCACCCAGCTCAATACCAACCTGAGCTCTGTGAGAAACAGCATCGAGAATTCGCTCA
GCAGCAGTGACTGTACCTCAGATCCAGCCAGCAAGATCTGCGATAGCATCAGACCAAGCCTAAGCAGTCT
GGGGAGCAGCCTCAATTCAAGTCAGCTCCCATCAGTGGATAGAGAACTCAACACTGTTACTGAAGTCGAC
AAAACTGATCTGGAGAGCCTCGTCAAAAGGGGGTATACGACAATTGATGAAATACCCAATACAATACAAA
ACCAAACTGTGGATGTCATCAAAGACGTCAAAAATACCTTGGACTCCATTAGCTCCAACATTAAGGACAT
GAGCCAAAGTATTCCTATTGAGGATATGCTGTTACAGGTCTCCCATTACCTTAATAACAGCAACAGATAC
TTAAACCAGGAGCTGCCCAAGCTGGAAGAATATGACTCGTACTGGTGGCTGGGTGGCTTGATTGTCTGCT
TTCTGCTGACTCTCATTGTGACCTTCTTTTTCCTGGGCTTGCTGTGTGGTGTGTTTGGCTATGACAAGCA
TGCCACCCCAACTAGAAGAGGCTGTGTGTCCAACACTGGAGGCATCTTCCTCATGGCTGGGGTTGGATTC
GGCTTCCTTTTTTGCTGGATATTGATGATCCTTGTGGTTCTTACGTTTGTTGTTGGTGCAAATGTGGAAA
AGTTGCTCTGCGAACCTTATGAAAACAAGAAATTATTACAGGTTTTGGACACTCCCTATCTGCTCAAGGA
ACAATGGCAATTTTATCTTTCTGGCATGCTATTCAATAACCCAGACATTAACATGACCTTTGAGCAAGTC
TACAGGGATTGCAAAAGAGGTCGAGGTATATATGCTGCTTTTCAGCTTGAGAATGTCGTCAACGTCAGTG
ATCATTTCAACATTGACCAGATTTCTGAAAACATAAATACGGAGTTGGAAAACCTGAATGTGAACATTGA
TAGCATTGAACTGTTGGATAACACAGGAAGGAAGAGCCTCGAGGACTTTGCACATTCTGGGATAGATACA
ATCGATTATTCCACATACTTGAAGGAGACTGAGAAATCCCCTACTGAAGTGAATCTGCTGACATTTGCCT
CTACCCTGGAAGCAAAAGCAAACCAGTTGCCTGAAGGAAAGCTGAAACAGGCCTTCTTACTGGATGTACA
GAATATAAGAGCCATCCACCAGCATCTCCTCCCTCCTGTGCAGCAATCACTGAATACGTTAAGACAAAGT
GTCTGGACCCTCCAGCAAACAAGCAACAAGTTGCCGGAGAAAGTGAAGAAGATCCTTGCCTCTTTGGACT
CTGTTCAGCATTTCCTCACCAATAACGTTTCCCTCATCGTTATCGGGGAAACGAAGAAGTTTGGGAAAAC
AATACTAGGCTACTTTGAACATTATCTGCACTGGGTCTTTTATGCCATCACAGAGAAGATGACATCCTGC
AAACCCATGGCCACCGCGATGGACTCTGCTGTTAATGGCATTCTGTGTGGCTATGTTGCGGACCCTCTGA
ATTTGTTCTGGTTCGGCATAGGGAAAGCCACGGTGCTCTTACTTCCGGCTGTAATCATTGCTATCAAGCT
GGCCAAGTACTATCGCAGGATGGATTCAGAGGATGTATACGACGATGTTGAGACTGTGCCCATGAAAAAT
TTGGAAATCGGTAGTAATGGTTATCATAAAGATCATTTATATGGTGTTCACAATCCTGTTATGACAAGCC
CGTCTCGATACTGA

Translation (867 aa):
MALVFSALLLLGLCGKISSEGQPAFHNTPGAMNYELPTTKYETQDTFNAGIVGPLYKMVHIFLNVVQPND
FPLDLIKKLIQNKNFDISVDSKEPEIIVLALKIALYEIGVLICAILGLLFIILMPLVGCFFCMCRCCNKC
GGEMHQRQKQNAPCRRKCLGLSLLVICLLMSLGIIYGFVANQQTRTRIKGTQKLAKSNFRDFQTLLTETP
KQIDYVVEQYTNTKNKAFSDLDGIGSVLGGRIKDQLKPKVTPVLEEIKAMATAIKQTKDALQNMSSSLKS
LQDAATQLNTNLSSVRNSIENSLSSSDCTSDPASKICDSIRPSLSSLGSSLNSSQLPSVDRELNTVTEVD
KTDLESLVKRGYTTIDEIPNTIQNQTVDVIKDVKNTLDSISSNIKDMSQSIPIEDMLLQVSHYLNNSNRY
LNQELPKLEEYDSYWWLGGLIVCFLLTLIVTFFFLGLLCGVFGYDKHATPTRRGCVSNTGGIFLMAGVGF
GFLFCWILMILVVLTFVVGANVEKLLCEPYENKKLLQVLDTPYLLKEQWQFYLSGMLFNNPDINMTFEQV
YRDCKRGRGIYAAFQLENVVNVSDHFNIDQISENINTELENLNVNIDSIELLDNTGRKSLEDFAHSGIDT
IDYSTYLKETEKSPTEVNLLTFASTLEAKANQLPEGKLKQAFLLDVQNIRAIHQHLLPPVQQSLNTLRQS
VWTLQQTSNKLPEKVKKILASLDSVQHFLTNNVSLIVIGETKKFGKTILGYFEHYLHWVFYAITEKMTSC
KPMATAMDSAVNGILCGYVADPLNLFWFGIGKATVLLLPAVIIAIKLAKYYRRMDSEDVYDDVETVPMKN
LEIGSNGYHKDHLYGVHNPVMTSPSRY


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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