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Report for CCDS51538.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
51538.1 Public Mus musculus 5 Amtn 23 108 98 CCDS HistoryNCBI Gene:71421Re-query CCDS DB by CCDS ID:51538.1Re-query CCDS DB by GeneID:71421See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 51538.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000073363.1 ENSMUSP00000073081.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000073363.1Link to Ensembl Protein Viewer:ENSMUSP00000073081.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000073363Re-query CCDS DB by Protein ID:ENSMUSP00000073081
Original member Current member NCBI NM_027793.1 NP_082069.1 Accepted alive Link to Nucleotide Sequence:NM_027793.1Link to Protein Sequence:NP_082069.1Re-query CCDS DB by Nucleotide ID:NM_027793Re-query CCDS DB by Protein ID:NP_082069Link to BLAST:NP_082069.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_082069.1 213 Q9D3J8 213 100% 0 0

Chromosomal Locations for CCDS 51538.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 88376304 88376357 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 88378033 88378119 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 88378855 88378920 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 88380277 88380363 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 88381601 88381636 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 88383000 88383026 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 88384885 88385158 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 88385617 88385627 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (642 nt):
ATGAAGACCATGATTCTACTGCTTTGTCTTCTAGGATCAGCCCAGTCATTACCAAAGCAGCTTAACCCTG
CTTCGGGAGTTCCTGCAACAAAACCGACTCCAGGTCAGGTGACCCCACTACCTCAACAGCAACCAAATCA
GGTTTTTCCTTCCATAAGTCTCATACCATTAACACAGCTGCTCACTCTGGGGTCAGACCTGCCGTTGTTC
AACCCTGCTGCTGGGCCCCACGGCGCACATACTCTCCCGTTCACCCTGGGACCACTGAATGGACAGCAAC
AGCTGCAACCGCAGATGTTACCCATTATTGTGGCACAACTTGGAGCTCAGGGTGCTCTCCTAAGCTCAGA
GGAACTGCCGTTAGCCTCCCAAATCTTCACAGGCCTCCTTATCCACCCCTTGTTCCCTGGAGCCATTCCT
CCCTCTGGTCAGGCAGGCACTAAACCAGATGTGCAGAATGGAGTCCTTCCTACAAGACAGGCAGGAGCGA
AAGCTGTCAACCAGGGAACCACTCCGGGCCATGTCACAACTCCTGGTGTCACAGATGATGATGACTATGA
GATGAGCACCCCTGCAGGCCTGCGAAGGGCCACACACACCACGGAGGGAACCACCATAGATCCACCAAAT
AGAACTCAGTAA

Translation (213 aa):
MKTMILLLCLLGSAQSLPKQLNPASGVPATKPTPGQVTPLPQQQPNQVFPSISLIPLTQLLTLGSDLPLF
NPAAGPHGAHTLPFTLGPLNGQQQLQPQMLPIIVAQLGAQGALLSSEELPLASQIFTGLLIHPLFPGAIP
PSGQAGTKPDVQNGVLPTRQAGAKAVNQGTTPGHVTTPGVTDDDDYEMSTPAGLRRATHTTEGTTIDPPN
RTQ


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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