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Report for CCDS51548.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
51548.1 Public Mus musculus 5 Fam47e 23 108 98 CCDS HistoryNCBI Gene:384198Re-query CCDS DB by CCDS ID:51548.1Re-query CCDS DB by GeneID:384198See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 51548.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000082382.7 ENSMUSP00000080987.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000082382.7Link to Ensembl Protein Viewer:ENSMUSP00000080987.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000082382Re-query CCDS DB by Protein ID:ENSMUSP00000080987
Original member Current member NCBI NM_001170571.1 NP_001164042.1 Accepted alive Link to Nucleotide Sequence:NM_001170571.1Link to Protein Sequence:NP_001164042.1Re-query CCDS DB by Nucleotide ID:NM_001170571Re-query CCDS DB by Protein ID:NP_001164042Link to BLAST:NP_001164042.1

Chromosomal Locations for CCDS 51548.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 92571589 92571710 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 92574569 92574713 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 92585256 92585411 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 92587516 92587593 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 92590516 92590614 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (600 nt):
ATGCTGTCCTGCATCCAGCCGCTTCCCACCTTACATTTTCTTTGCATCATCCGTGAGCACCTGGCATGTG
ATTGTCTGCCTCGATGTCTCTCTCCATCCTGCATAGCCGAAGCCACGCAAAGGCCTAAGAAGACGCTGAT
CTCACGTTCAGGCCAGTGGCTTTGTGAAGAAAAGTCAAGCAAAGTGGATTCACTCTATAAAGACAGACTC
CTCCATGATGACGTACACAGAGGAGTCACCGACTTCTGCCACTGGGCCGAGGACCTTAATCCTCAGAAGC
CGAAGCGGGTAAAGATGAGGTACGGAGCCTGGTACCTGAACACCAGCTTGTGGAAGAGGCAAAGAGCGGA
TGAACCTCTGGTCGACCCCATGGTCTCACACAAAGCTCAAGATTCAACCTTTAAAGAGCAGCTTCAGGAG
CAGGGGGAGCTGCTTGCAGGCCTGCGAGGGACAGCAGCCTTTAAGGACTTCATTCTAAGCAGGGGCTACA
GGATGCCCAGGTTCCTTGAGAAGATATATGCGGAGGAGAAAAATAAATCTGAAAATATTAAGGCTCCTAA
AAAACTCACGCAAACAGAGAAGAATCCCGGGAGCAGATGA

Translation (199 aa):
MLSCIQPLPTLHFLCIIREHLACDCLPRCLSPSCIAEATQRPKKTLISRSGQWLCEEKSSKVDSLYKDRL
LHDDVHRGVTDFCHWAEDLNPQKPKRVKMRYGAWYLNTSLWKRQRADEPLVDPMVSHKAQDSTFKEQLQE
QGELLAGLRGTAAFKDFILSRGYRMPRFLEKIYAEEKNKSENIKAPKKLTQTEKNPGSR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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