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Report for CCDS51576.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
51576.1 Public Mus musculus 5 Hsd17b13 23 108 98 CCDS HistoryNCBI Gene:243168Re-query CCDS DB by CCDS ID:51576.1Re-query CCDS DB by GeneID:243168See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 51576.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000112803.2 ENSMUSP00000108422.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000112803.2Link to Ensembl Protein Viewer:ENSMUSP00000108422.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000112803Re-query CCDS DB by Protein ID:ENSMUSP00000108422
Original member Current member NCBI NM_001163486.1 NP_001156958.1 Accepted alive Link to Nucleotide Sequence:NM_001163486.1Link to Protein Sequence:NP_001156958.1Re-query CCDS DB by Nucleotide ID:NM_001163486Re-query CCDS DB by Protein ID:NP_001156958Link to BLAST:NP_001156958.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001156958.1 300 Q8VCR2-2 300 100% 0 0

Chromosomal Locations for CCDS 51576.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 103963773 103963863 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 103965775 103965891 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 103966971 103967108 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 103968698 103968804 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 103970762 103970893 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 103972567 103972674 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 103977106 103977315 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (903 nt):
ATGAACCTCATCCTGGAATTTCTCCTTCTGGTGGGCGTCATCATCTACTCCTACCTGGAGTCACTGGTAA
AG
TTCTTCATTCCCCGGAGAAGGAAATCTGTGACCGGGCAGACCGTTCTCATCACGGGGGCCGGACACGG
A
ATAGGCAGGCTGACTGCATATGAATTTGCAAAGCAGAAAAGCAGACTGGTTCTATGGGATATCAATAAG
CGT
GGTGTTGAGGAAACCGCGGACAAATGCAGGAAACTGGGGGCCGTCGTGCACGTGTTTGTGGTGGACT
GC
AGCAACCGGGCCGAGATTTACAACTCTGTGGATCAGGTAAAGAGAGAAGTAGGTGATGTCGAGATCGT
G
GTAAACAACGCCGGGGCGATATATCCAGCAGACCTTCTTAGTGCCAAGGACGAGGAGATCACCAAGACC
TTT
GAGGTCAATATCCTCGGACATTTTTGGATCATAAAAGCACTCCTTCCATCGATGCTGAGAAGAAACT
CT
GGCCACATTGTCACAGTGGCTTCGGTGTGCGGCCATGGAGTGATTCCTTATCTCATCCCTTATTGCTC
C
AGCAAGTTTGCTGCTGTGGGCTTCCACCGAGCACTGACCGCAGAACTGGACACCTTGGGGAAAACCGGT
ATC
CAAACCTCGTGTCTCTGCCCTGTGTTCGTGAATACTGGCTTCACCAAAAACCCGAGTACAAGGTTAT
GG
CCTGTATTAGAGCCGGAAGAAGTTGCAAGGAGTCTGATCAATGGAATACTTACCAACAAGAAAATGAT
C
TTCGTTCCATCCTATATCAATATTTCTCTGATCCTGGAAAAGTTTCTTCCTGAGCGTGCCTTAAAAGCG
ATC
AGTCGTATACAGAACATTCAATTTGAAGCAATTGTGGGCCACAAAACCAAGATGAAGTAG


Translation (300 aa):
MNLILEFLLLVGVIIYSYLESLVKFFIPRRRKSVTGQTVLITGAGHGIGRLTAYEFAKQKSRLVLWDINK
R
GVEETADKCRKLGAVVHVFVVDCSNRAEIYNSVDQ
VKREVGDVEIVVNNAGAIYPADLLSAKDEEITKT
F
EVNILGHFW
IIKALLPSMLRRNSGHIVTVASVCGHGVIPYLIPYCSSKFAAVGFHRALTAELDTLGKTG
I
QTSCLCPVFVNTGFTKNPST
RLWPVLEPEEVARSLINGILTNKKMIFVPSYINISLILEKFLPERALKA
I
SRIQNIQFEAIVGHKTKMK




Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser