NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS51633.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
51633.1 Public Mus musculus 5 Slc8b1 23 108 98 CCDS HistoryNCBI Gene:170756Re-query CCDS DB by CCDS ID:51633.1Re-query CCDS DB by GeneID:170756See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 51633.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000076051.11 ENSMUSP00000075428.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000076051.11Link to Ensembl Protein Viewer:ENSMUSP00000075428.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000076051Re-query CCDS DB by Protein ID:ENSMUSP00000075428
Original member Current member NCBI NM_001177595.1 NP_001171066.1 Accepted alive Link to Nucleotide Sequence:NM_001177595.1Link to Protein Sequence:NP_001171066.1Re-query CCDS DB by Nucleotide ID:NM_001177595Re-query CCDS DB by Protein ID:NP_001171066Link to BLAST:NP_001171066.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001171066.1 552 Q925Q3-2 552 100% 0 0

Chromosomal Locations for CCDS 51633.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 120513177 120513332 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 120519630 120519782 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 120519866 120519918 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 120520603 120520660 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 120520781 120520886 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 120520968 120521135 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 120521754 120521861 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 120523999 120524058 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 120524204 120524334 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 120525659 120525800 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 120527741 120527862 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 120529510 120529663 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 120532860 120533107 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1659 nt):
ATGGCAAGCAGATGGCTGGCTCTGCTCTGGGCTCCTGTCTTCCTCTGTGTGGCTCTGATACTGGAGACGG
CGTCTGGGACCGGAGACCCATCCACAAAAGCCCATGGACACATCCAGTTTTCAGCTGGAAGTGTCAACCA
GACTGCCATGGCGGATTGCCGAGCCGTGTGTGGCCTGAACACATCTGATCGCTGTGACTTTGTCAGGAGG
AATCCGGACTGCCGCAGCGAGGCGGGCTACCTGGACTACCTTGAGGGCATCTTCTGCTACTTCCCCCCCA
ACCTCCTCCCTCTGGCCATCACCCTCTACGTTTTCTGGCTGCTTTACCTCTTTCTGATCCTGGGAGTCAC
CGCGGCCAAGTTCTTCTGCCCTAACCTGTCAGCCATCTCCACTAACCTCAAACTCTCCCACAACGTGGCA
GGTGTCACCTTCCTGGCCTTTGGAAATGGCGCTCCAGACATCTTCAGTGCTTTAGTGGCTTTCTCAGACC
CACGTACTGCCGGCCTGGCCATCGGGGCTCTGTTTGGTGCAGGGGTGCTGGTCACCACTGTGGTGGCTGG
AGGCATCACCATCCTGCATCCCTTCATGGCTGCCTCCAGGCCCTTCCTCAGGGACATCGCTTTCTACATG
GTGGCTGTGTTCCTAACCTTCACTGCACTCTATCTCGGCAGGATCACGCTGACGTGGGCGCTGGGTTACC
TGGGCCTCTACGTGTTCTACGTGGTCACGGTCATCATCTGCACTTGGGTCTACCAACGGCAGCGAAGCAG
GTCTCTGGTCCACTCCATATCGGAGACACCAGAGTTGCTGTCTGAGTCAGAGGAGGACCAGATGTCTTCC
AACACCAACAGCTATGACTATGGAGATGAATACCGGCCTCTGTTGCTGGGTCGGGAGACCACTGTCCAGA
TCCTGATCCAAGCCCTGAATCCCTTGGACTACAGGAAGTGGAGAACTCAGTCGATATCCTGGAGGGTCCT
GAAGGTAGTCAAGTTGCCTGTGGAGTTCTTGTTGCTGCTCACAGTACCGGTTGTGGACCCCGACAAGGAC
GATCGGAATTGGAAACGGCCACTCAACTGTCTGCAGCTGGTCATCAGCCCCCTGGTCCTGGTCCTGACCC
TGCAGTCGGGGGTCTATGGCATCTATGAGATCGGCGGTCTCCTTCCTGTCTGGGCTGTGGTGGTGATCGT
GGGCACAGCGCTGGCTTCAGTGACCTTCTTTGCCACGTCTAACAGAGAACCCCCTAGACTGCACTGGCTC
TTTGCTTTCCTGGGTTTCCTGACCAGTGCCCTGTGGATCAATGCAGCCGCCACAGAGGTGGTGAACATAT
TACGGTCCCTGGGTGTGATCTTCCGCCTGAGCAACACCGTCCTAGGGCTGACCCTCCTGGCCTGGGGAAA
CAGCATTGGAGCTGGAGCCAGACGGATTACTGGTGTGGGTGCTGGCCAGTGCCCTGGGCCTCAGCTTGAT
CTTCTCCCTGGTCTCCGTGCCGCTTCAGTGTTTCCAGCTCAGCAAGGCTTACGGCCTCTGCCTCCTCCTC
TTCTACATCTGTTTCCTTGTTGTGGTCCTGCTCACAGAGTTTGGGGTGATTCACCTGAAGAAGGCGTGAC
TGAAGCTGCTTGGCCTAGAGGTGTGGGGGCGATTCTGCTAGCCTCCTGA

Translation (552 aa):
MASRWLALLWAPVFLCVALILETASGTGDPSTKAHGHIQFSAGSVNQTAMADCRAVCGLNTSDRCDFVRR
NPDCRSEAGYLDYLEGIFCYFPPNLLPLAITLYVFWLLYLFLILGVTAAKFFCPNLSAISTNLKLSHNVA
GVTFLAFGNGAPDIFSALVAFSDPRTAGLAIGALFGAGVLVTTVVAGGITILHPFMAASRPFLRDIAFYM
VAVFLTFTALYLGRITLTWALGYLGLYVFYVVTVIICTWVYQRQRSRSLVHSISETPELLSESEEDQMSS
NTNSYDYGDEYRPLLLGRETTVQILIQALNPLDYRKWRTQSISWRVLKVVKLPVEFLLLLTVPVVDPDKD
DRNWKRPLNCLQLVISPLVLVLTLQSGVYGIYEIGGLLPVWAVVVIVGTALASVTFFATSNREPPRLHWL
FAFLGFLTSALWINAAATEVVNILRSLGVIFRLSNTVLGLTLLAWGNSIGAGARRITGVGAGQCPGPQLD
LLPGLRAASVFPAQQGLRPLPPPLLHLFPCCGPAHRVWGDSPEEGVTEAAWPRGVGAILLAS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH