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Report for CCDS51634.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
51634.1 Public Mus musculus 5 Slc8b1 23 108 98 CCDS HistoryNCBI Gene:170756Re-query CCDS DB by CCDS ID:51634.1Re-query CCDS DB by GeneID:170756See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 51634.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000111890.8 ENSMUSP00000107521.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000111890.8Link to Ensembl Protein Viewer:ENSMUSP00000107521.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000111890Re-query CCDS DB by Protein ID:ENSMUSP00000107521
Original member Current member NCBI NM_001177594.1 NP_001171065.1 Accepted alive Link to Nucleotide Sequence:NM_001177594.1Link to Protein Sequence:NP_001171065.1Re-query CCDS DB by Nucleotide ID:NM_001177594Re-query CCDS DB by Protein ID:NP_001171065Link to BLAST:NP_001171065.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001171065.1 568 Q925Q3-3 568 100% 0 0

Chromosomal Locations for CCDS 51634.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 120513177 120513332 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 120519630 120519782 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 120519866 120519918 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 120520774 120520886 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 120520968 120521135 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 120521754 120521861 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 120523999 120524058 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 120524204 120524334 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 120525659 120525800 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 120527741 120527862 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 120529510 120529663 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 120530316 120530396 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 120531081 120531148 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 120532860 120533057 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1707 nt):
ATGGCAAGCAGATGGCTGGCTCTGCTCTGGGCTCCTGTCTTCCTCTGTGTGGCTCTGATACTGGAGACGG
CGTCTGGGACCGGAGACCCATCCACAAAAGCCCATGGACACATCCAGTTTTCAGCTGGAAGTGTCAACCA
GACTGCCATGGCGGATTGCCGAGCCGTGTGTGGCCTGAACACATCTGATCGCTGTGACTTTGTCAGGAGG
AATCCGGACTGCCGCAGCGAGGCGGGCTACCTGGACTACCTTGAGGGCATCTTCTGCTACTTCCCCCCCA
ACCTCCTCCCTCTGGCCATCACCCTCTACGTTTTCTGGCTGCTTTACCTCTTTCTGATCCTGGGAGTCAC
CGCGGCCAAGTTCCCCCATGGTGTCACCTTCCTGGCCTTTGGAAATGGCGCTCCAGACATCTTCAGTGCT
TTAGTGGCTTTCTCAGACCCACGTACTGCCGGCCTGGCCATCGGGGCTCTGTTTGGTGCAGGGGTGCTGG
TCACCACTGTGGTGGCTGGAGGCATCACCATCCTGCATCCCTTCATGGCTGCCTCCAGGCCCTTCCTCAG
GGACATCGCTTTCTACATGGTGGCTGTGTTCCTAACCTTCACTGCACTCTATCTCGGCAGGATCACGCTG
ACGTGGGCGCTGGGTTACCTGGGCCTCTACGTGTTCTACGTGGTCACGGTCATCATCTGCACTTGGGTCT
ACCAACGGCAGCGAAGCAGGTCTCTGGTCCACTCCATATCGGAGACACCAGAGTTGCTGTCTGAGTCAGA
GGAGGACCAGATGTCTTCCAACACCAACAGCTATGACTATGGAGATGAATACCGGCCTCTGTTGCTGGGT
CGGGAGACCACTGTCCAGATCCTGATCCAAGCCCTGAATCCCTTGGACTACAGGAAGTGGAGAACTCAGT
CGATATCCTGGAGGGTCCTGAAGGTAGTCAAGTTGCCTGTGGAGTTCTTGTTGCTGCTCACAGTACCGGT
TGTGGACCCCGACAAGGACGATCGGAATTGGAAACGGCCACTCAACTGTCTGCAGCTGGTCATCAGCCCC
CTGGTCCTGGTCCTGACCCTGCAGTCGGGGGTCTATGGCATCTATGAGATCGGCGGTCTCCTTCCTGTCT
GGGCTGTGGTGGTGATCGTGGGCACAGCGCTGGCTTCAGTGACCTTCTTTGCCACGTCTAACAGAGAACC
CCCTAGACTGCACTGGCTCTTTGCTTTCCTGGGTTTCCTGACCAGTGCCCTGTGGATCAATGCAGCCGCC
ACAGAGGTGGTGAACATATTACGGTCCCTGGGTGTGATCTTCCGCCTGAGCAACACCGTCCTAGGGCTGA
CCCTCCTGGCCTGGGGAAACAGCATTGGAGATGCCTTCTCAGATTTCACGCTGGCCCGCCAAGGATACCC
TCGGATGGCCTTCTCCGCCTGTTTCGGGGGCATCATCTTCAACATCCTGGTTGGTGTGGGGCTGGGCTGC
TTGCTGCAGATCATCAGGAACCACGTTGTGGAGGTGAAGCTGGAGCCAGACGGATTACTGGTGTGGGTGC
TGGCCAGTGCCCTGGGCCTCAGCTTGATCTTCTCCCTGGTCTCCGTGCCGCTTCAGTGTTTCCAGCTCAG
CAAGGCTTACGGCCTCTGCCTCCTCCTCTTCTACATCTGTTTCCTTGTTGTGGTCCTGCTCACAGAGTTT
GGGGTGATTCACCTGAAGAAGGCGTGA

Translation (568 aa):
MASRWLALLWAPVFLCVALILETASGTGDPSTKAHGHIQFSAGSVNQTAMADCRAVCGLNTSDRCDFVRR
NPDCRSEAGYLDYLEGIFCYFPPNLLPLAITLYVFWLLYLFLILGVTAAKFPHGVTFLAFGNGAPDIFSA
LVAFSDPRTAGLAIGALFGAGVLVTTVVAGGITILHPFMAASRPFLRDIAFYMVAVFLTFTALYLGRITL
TWALGYLGLYVFYVVTVIICTWVYQRQRSRSLVHSISETPELLSESEEDQMSSNTNSYDYGDEYRPLLLG
RETTVQILIQALNPLDYRKWRTQSISWRVLKVVKLPVEFLLLLTVPVVDPDKDDRNWKRPLNCLQLVISP
LVLVLTLQSGVYGIYEIGGLLPVWAVVVIVGTALASVTFFATSNREPPRLHWLFAFLGFLTSALWINAAA
TEVVNILRSLGVIFRLSNTVLGLTLLAWGNSIGDAFSDFTLARQGYPRMAFSACFGGIIFNILVGVGLGC
LLQIIRNHVVEVKLEPDGLLVWVLASALGLSLIFSLVSVPLQCFQLSKAYGLCLLLFYICFLVVVLLTEF
GVIHLKKA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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