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Report for CCDS51738.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
51738.1 Public Mus musculus 6 Ahcyl2 23 108 98 CCDS HistoryNCBI Gene:74340Re-query CCDS DB by CCDS ID:51738.1Re-query CCDS DB by GeneID:74340See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 51738.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000115238.9 ENSMUSP00000110893.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000115238.9Link to Ensembl Protein Viewer:ENSMUSP00000110893.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000115238Re-query CCDS DB by Protein ID:ENSMUSP00000110893
Original member Current member NCBI NM_001171001.1 NP_001164472.1 Accepted alive Link to Nucleotide Sequence:NM_001171001.1Link to Protein Sequence:NP_001164472.1Re-query CCDS DB by Nucleotide ID:NM_001171001Re-query CCDS DB by Protein ID:NP_001164472Link to BLAST:NP_001164472.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001164472.1 508 Q68FL4-2 508 100% 0 0

Chromosomal Locations for CCDS 51738.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 29859723 29859779 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 29863143 29863251 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 29870568 29870711 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 29871186 29871286 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 29878529 29878631 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 29880549 29880643 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 29883623 29883729 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 29886118 29886234 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 29890681 29890744 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 29891201 29891289 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 29894819 29894889 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 29896322 29896416 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 29903189 29903287 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 29906508 29906576 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 29906681 29906759 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 29908347 29908467 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 29909040 29909046 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1527 nt):
ATGCTGAGCAGCAAGAAGAAATACATTGTCAATAGCAACTCTGGGATTAAAGCCCAGATTCAGTTTGCTG
ACCAGAAGCAGGAATTCAACAAACGTCCCACCAAAATCGGACGTCGCTCTTTGTCTCGTTCCATCTCTCA
GTCATCTACTGACAGCTATAGCTCAGCTGCCTCATATACAGATAGCTCTGACGATGAGACATCCCCCAGG
GACAAGCAGCAAAAGAACTCTAAGGGAAGTAGCGACTTCTGTGTCAAGAACATCAAACAAGCGGAGTTTG
GACGCAGAGAAATTGAAATTGCTGAGCAAGAGATGCCTGCCTTGATGGCTTTAAGGAAGAGAGCCCAAGG
AGAAAAGCCTTTGGCTGGAGCCAAAATTGTGGGTTGTACGCACATCACTGCTCAGACAGCCGTGCTTATG
GAGACACTGGGTGCTCTGGGGGCACAGTGCCGATGGGCTGCCTGCAACATCTACTCCACCCTCAATGAAG
TGGCTGCTGCTCTCGCAGAAAGTGGGTTTCCCGTCTTTGCCTGGAAAGGAGAATCAGAAGATGACTTTTG
GTGGTGCATTGACAGATGCGTGAATGTGGAGGGCTGGCAGCCAAACATGATACTGGATGATGGAGGAGAT
CTGACTCACTGGATTTATAAAAAGTATCCCAACATGTTTAAAAAAATCAAAGGCATAGTCGAGGAGAGTG
TTACTGGAGTCCATAGGCTGTACCAACTGTCCAAAGCTGGGAAGCTGTGTGTTCCCGCCATGAACGTCAA
TGACTCAGTCACTAAGCAGAAATTTGATAACCTCTACTGTTGCCGTGAATCTATTCTTGACGGACTTAAA
AGGACAACAGATATGATGTTTGGTGGAAAGCAGGTGGTGGTCTGTGGCTATGGAGAGGTGGGAAAGGGGT
GCTGCGCTGCTCTGAAAGCCATGGGCTCCATTGTGTACGTGACTGAGATTGACCCCATCTGTGCCCTGCA
AGCCTGTATGGATGGATTCCGACTAGTGAAGCTGAATGAAGTCATCCGACAGGTCGACATTGTTATTACT
TGCACAGGGAACAAGAATGTGGTAACCAGAGAGCACTTGGACCGTATGAAGAATAGCTGCATCGTTTGTA
ACATGGGCCATTCCAACACCGAGATTGATGTGGCCAGCCTGCGGACACCAGAACTGACCTGGGAGAGAGT
AAGATCCCAAGTTGATCATGTGATATGGCCTGATGGCAAGAGGATAGTACTGCTGGCAGAGGGCCGTCTA
CTGAATCTCAGCTGCTCCACAGTGCCTACATTTGTGCTCTCCATCACTGCTACCACTCAGGCTCTCGCCT
TGATAGAACTTTACAATGCTCCTGAGGGTCGCTATAAGCAAGATGTGTACCTGCTACCCAAGAAAATGGA
TGAGTATGTGGCAAGCCTACACCTGCCCACCTTTGATGCCCACCTGACAGAGCTAACAGATGAACAAGCC
AAGTATCTGGGACTCAACAAGAATGGACCCTTCAAGCCTAACTACTACAGGTATTAA

Translation (508 aa):
MLSSKKKYIVNSNSGIKAQIQFADQKQEFNKRPTKIGRRSLSRSISQSSTDSYSSAASYTDSSDDETSPR
DKQQKNSKGSSDFCVKNIKQAEFGRREIEIAEQEMPALMALRKRAQGEKPLAGAKIVGCTHITAQTAVLM
ETLGALGAQCRWAACNIYSTLNEVAAALAESGFPVFAWKGESEDDFWWCIDRCVNVEGWQPNMILDDGGD
LTHWIYKKYPNMFKKIKGIVEESVTGVHRLYQLSKAGKLCVPAMNVNDSVTKQKFDNLYCCRESILDGLK
RTTDMMFGGKQVVVCGYGEVGKGCCAALKAMGSIVYVTEIDPICALQACMDGFRLVKLNEVIRQVDIVIT
CTGNKNVVTREHLDRMKNSCIVCNMGHSNTEIDVASLRTPELTWERVRSQVDHVIWPDGKRIVLLAEGRL
LNLSCSTVPTFVLSITATTQALALIELYNAPEGRYKQDVYLLPKKMDEYVASLHLPTFDAHLTELTDEQA
KYLGLNKNGPFKPNYYRY


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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