NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS51844.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
51844.1 Public Mus musculus 6 Mgll 23 108 98 CCDS HistoryNCBI Gene:23945Re-query CCDS DB by CCDS ID:51844.1Re-query CCDS DB by GeneID:23945See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 51844.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000113582.7 ENSMUSP00000109212.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000113582.7Link to Ensembl Protein Viewer:ENSMUSP00000109212.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000113582Re-query CCDS DB by Protein ID:ENSMUSP00000109212
Original member NCBI NM_001166249.1 NP_001159721.1 Updated not alive Link to Nucleotide Sequence:NM_001166249.1Link to Protein Sequence:NP_001159721.1Re-query CCDS DB by Nucleotide ID:NM_001166249Re-query CCDS DB by Protein ID:NP_001159721
Current member NCBI NM_001166249.2 NP_001159721.1 Accepted alive Link to Nucleotide Sequence:NM_001166249.2Link to Protein Sequence:NP_001159721.1Re-query CCDS DB by Nucleotide ID:NM_001166249Re-query CCDS DB by Protein ID:NP_001159721Link to BLAST:NP_001159721.1

Chromosomal Locations for CCDS 51844.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 88725721 88725845 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 88764596 88764702 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 88808011 88808147 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 88809336 88809446 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 88818574 88818663 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 88823326 88823406 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 88825651 88825776 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (777 nt):
ATGCCTGAGGCAAGTTCACCCAGGCGAACTCCACAGAATGTTCCCTACCAGGACCTGCCTCACCTGGTCA
ATGCAGACGGACAGTACCTCTTTTGTAGATACTGGAAGCCCAGTGGCACACCCAAGGCCCTCATCTTTGT
GTCCCATGGAGCTGGGGAACACTGTGGCCGTTATGATGAGCTGGCTCATATGTTGAAGGGGCTGGACATG
CTGGTATTTGCCCATGACCATGTTGGCCATGGGCAGAGTGAGGGAGAGAGGATGGTGGTGTCGGACTTCC
AAGTTTTTGTCAGAGATGTGCTGCAACACGTGGACACCATCCAGAAGGACTACCCCGACGTCCCCATCTT
CCTCCTGGGCCACTCCATGGGCGGTGCCATCTCCATCCTAGTGGCTGCAGAGAGGCCAACCTACTTTTCT
GGCATGGTCCTGATTTCACCTCTGGTCCTTGCCAATCCGGAATCTGCATCGACTTTGAAGGTCCTTGCTG
CCAAACTGCTCAATTTTGTCCTGCCAAATATGACCTTGGGGCGCATTGACTCCAGCGTGCTGTCTCGGAA
CAAGTCGGAGGGTTCTGCTGACCGGCTTTGCGACAGCAAAGGTGCCTACCTGCTCATGGAATCATCCCGG
AGTCAGGACAAAACACTCAAGATGTATGAAGGTGCCTATCACGTCCTCCACAGGGAGCTTCCGGAAGTGA
CCAACTCCGTCCTCCATGAAGTAAACTCGTGGGTGTCTCACAGGATAGCAGCAGCAGGAGCTGGGTGTCC
ACCCTGA

Translation (258 aa):
MPEASSPRRTPQNVPYQDLPHLVNADGQYLFCRYWKPSGTPKALIFVSHGAGEHCGRYDELAHMLKGLDM
LVFAHDHVGHGQSEGERMVVSDFQVFVRDVLQHVDTIQKDYPDVPIFLLGHSMGGAISILVAAERPTYFS
GMVLISPLVLANPESASTLKVLAAKLLNFVLPNMTLGRIDSSVLSRNKSEGSADRLCDSKGAYLLMESSR
SQDKTLKMYEGAYHVLHRELPEVTNSVLHEVNSWVSHRIAAAGAGCPP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH