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Report for CCDS51883.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
51883.1 Public Mus musculus 6 Rasgef1a 23 108 98 CCDS HistoryNCBI Gene:70727Re-query CCDS DB by CCDS ID:51883.1Re-query CCDS DB by GeneID:70727See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 51883.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000203482.1 ENSMUSP00000145077.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000203482.1Link to Ensembl Protein Viewer:ENSMUSP00000145077.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000203482Re-query CCDS DB by Protein ID:ENSMUSP00000145077
Original member Current member NCBI NM_027526.1 NP_081802.1 Accepted alive Link to Nucleotide Sequence:NM_027526.1Link to Protein Sequence:NP_081802.1Re-query CCDS DB by Nucleotide ID:NM_027526Re-query CCDS DB by Protein ID:NP_081802Link to BLAST:NP_081802.1

Chromosomal Locations for CCDS 51883.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 118066445 118066462 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 118080358 118080561 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 118083014 118083136 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 118084421 118084558 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 118085264 118085485 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 118085773 118085847 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 118086217 118086309 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 118087027 118087129 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 118087207 118087286 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 118088109 118088300 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 118089103 118089226 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 118089435 118089507 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 118089816 118089840 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1470 nt):
ATGTTTCTGGAGCCCCAGGAAGCTATGCCCCAGACATCTGTGGTCTTCTCCAGCATCCTTGGGCCCAACT
GT
AACAGACAGGTGCAGCCTGGCATGGGGGAGAGAGGAGGTGGGGCCAGCAGCGGCTCCAAGGACCTCAT
T
TTTCAAGATGGACGCCTCACTTCTGGGTCCTTGGAGGCCTTGATGGAGCATCTGGTTCCAACGGTGGAC
TAT
TATCCTGATCGGACATACATCTTCACGTTTCTCCTGAGTTCCCGGGTCTTCATGCCCCCTCATGACC
TT
CTGGCTCGAGTAGGGCAGATCTGCCTGGAGCAGAGGCAACAGCTAGAGGCTGGGCCTGAGAAGGCCAA
G
CTGAAGTCCTTCTCGACCAAGATTGTGCAGCTGTTGAAGGAGTGGACGGAGGCCTTCCCTTATGACTTC
CAG
GACGAGAAGGTCATGGCGGAGCTGAAGGCCATCGCACACCGCGTCACTCAGTGTGATGAGGAGAATG
GC
ACAGTGAAGAAAGCCATTGCCCAAATGATACAAAGCTTGCTGCTGTCCCTGGCTGCCCGAAGTCAGCT
C
CAAGAGCTTCGGGAGAAGCTCCGGTCACCCGTTGTGGACAAAGGGCCTGTCCTTAAGGCCAAGCCACCA
GCT
GCCCAGAAAGACATCCTGGGTGTGTGCAGCGACCCCCTGGTGCTGGCCCAGCAGCTGACTCACATTG
AA
CTGGAACGGGTCAACAGCATCCGCCCTGAGGACCTGATGCAGATCATCAGCCACATGGACTCTCTGGA
C
AATCACAGGTGCCGTGGAGACATGACTAAGACCTTCAGTTTAGAAGCGTATGACAACTGGTTCAACTGC
TTG
AGCATGCTCGTGGCTACAGAGGTGTGCCGGGTGGTAAAGAAGAAACACCGGACCCGCATGCTGGAGT
TC
TTCATTGATGTGGCCCGAGAGTGTTTCAACATCGGGAACTTCAACTCTATGATGGCCATCATATCTGG
C
ATGAACCTCAGCCCAGTGGCACGGCTGAAGAAAACGTGGTCCAAAGTCAAGACAGCCAAGTTTGATGTC
TTG
GAGCATCACATGGACCCCTCCAGCAACTTCTGCAACTACCGGACAGCCCTGCAGGGGGCGACACAGA
GA
TCCCAGACAGCCAACAGCAGCCGTGAGAAGATTGTCATCCCCGTGTTCAACCTCTTCGTTAAGGACAT
C
TACTTTCTACACAAAATCCACACCAACCACCTACCCAATGGGCACATTAACTTCAAAAAATTTTGGGAA
ATT
TCCAGACAGATCCACGAGTTCATGACATGGACACAGGTAGAATGTCCCTTTGAGAAGGACAAGAAGA
TT
CAGAGTTACGTGCTCACGGCGCCCATCTACAGCGAGGAAGCTCTCTTCATCGCCTCCTTTGAAAGTGA
A
GGTCCTGAAAATCACATGGAGAAGGACAGCTGGAAGGCACTCAGGACCACTCTCCTTAACAGAGCCTGA


Translation (489 aa):
MFLEPQEAMPQTSVVFSSILGPNCNRQVQPGMGERGGGASSGSKDLIFQDGRLTSGSLEALMEHLVPTVD
Y
YPD
RTYIFTFLLSSRVFMPPHDLLARVGQICLEQRQQLEAGPEKAKLKSFSTKIVQLLKEWTEAFPYDF
Q
DEKVMAELKAIAHRVTQCDE
ENGTVKKAIAQMIQSLLLSLAARSQLQELREKLRSPVVDKGPVLKAKPP
A
AQKDILGVCSDPLVLAQQLTHIEL
ERVNSIRPEDLMQIISHMDSLDNHRCRGDMTKTFSLEAYDNWFNC
L
SMLVATEVCR
VVKKKHRTRMLEFFIDVARECFNIGNFNSMMAIISGMNLSPVARLKKTWSKVKTAKFDV
L
E
HHMDPSSNFCNYRTALQGATQRSQTANSSREKIVIPVFNLFVKDIYFLHKIHTNHLPNGHINFKKFWE
I
SRQIHEFMTWTQVECPFEKDKKIQSYVLTAPIYSEE
ALFIASFESEGPENHMEKDSWKALRTTLLNRA



Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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