NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS51923.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
51923.1 Public Mus musculus 6 Gabarapl1 23 108 98 CCDS HistoryNCBI Gene:57436Re-query CCDS DB by CCDS ID:51923.1Re-query CCDS DB by GeneID:57436See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 51923.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000032264.8 ENSMUSP00000032264.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000032264.8Link to Ensembl Protein Viewer:ENSMUSP00000032264.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000032264Re-query CCDS DB by Protein ID:ENSMUSP00000032264
Original member Current member EBI ENSMUST00000204956.1 ENSMUSP00000145175.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000204956.1Link to Ensembl Protein Viewer:ENSMUSP00000145175.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000204956Re-query CCDS DB by Protein ID:ENSMUSP00000145175
Original member Current member NCBI NM_020590.4 NP_065615.1 Accepted alive Link to Nucleotide Sequence:NM_020590.4Link to Protein Sequence:NP_065615.1Re-query CCDS DB by Nucleotide ID:NM_020590Re-query CCDS DB by Protein ID:NP_065615Link to BLAST:NP_065615.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_065615.1 117 Q8R3R8 117 100% 0 0

Chromosomal Locations for CCDS 51923.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 129533447 129533536 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 129537491 129537569 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 129538570 129538688 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 129541102 129541167 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (354 nt):
ATGAAGTTCCAGTATAAGGAGGACCACCCCTTCGAGTATCGGAAAAAGGAAGGTGAAAAGATTAGGAAGA
AATACCCGGACCGGGTGCCGGTCATCGTGGAGAAGGCTCCTAAAGCCAGGGTCCCTGATCTGGATAAGAG
GAAGTACCTTGTGCCCTCCGACCTCACTGTTGGCCAGTTCTACTTCTTAATCCGGAAGAGGATCCACCTG
AGACCTGAGGACGCCTTATTCTTCTTTGTCAACAACACCATCCCTCCCACCAGTGCTACCATGGGCCAGC
TGTATGAGGACAACCACGAGGAAGACTATTTTCTGTATGTGGCCTACAGTGATGAAAGTGTCTATGGAAA
ATGA

Translation (117 aa):
MKFQYKEDHPFEYRKKEGEKIRKKYPDRVPVIVEKAPKARVPDLDKRKYLVPSDLTVGQFYFLIRKRIHL
RPEDALFFFVNNTIPPTSATMGQLYEDNHEEDYFLYVAYSDESVYGK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH