NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
The CCDS database will be unavailable on Thursday, April 25, 2024, starting at 7:00 a.m. EDT for up to 120 minutes.
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS51942.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
51942.1 Public Mus musculus 6 Rerg 23 108 98 CCDS HistoryNCBI Gene:232441Re-query CCDS DB by CCDS ID:51942.1Re-query CCDS DB by GeneID:232441See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 51942.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000119610.3 ENSMUSP00000113702.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000119610.3Link to Ensembl Protein Viewer:ENSMUSP00000113702.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000119610Re-query CCDS DB by Protein ID:ENSMUSP00000113702
Original member Current member NCBI NM_001164214.1 NP_001157686.1 Accepted alive Link to Nucleotide Sequence:NM_001164214.1Link to Protein Sequence:NP_001157686.1Re-query CCDS DB by Nucleotide ID:NM_001164214Re-query CCDS DB by Protein ID:NP_001157686Link to BLAST:NP_001157686.1

Chromosomal Locations for CCDS 51942.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 137056133 137056540 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 137057813 137057886 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 137164935 137164995 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (543 nt):
ATGGCTAAGAGCGCAGAGGTCAAGCTGGCCATATTTGGAAGAGCGGGCGTGGGCAAGTCAGAATCAACCT
ACCGACACCAGGCAACCATAGACGATGAAGTTGTTTCTATGGAGATCCTGGACACCGCTGGCCAGGAAGA
CACCATCCAGAGGGAAGGGCACATGCGCTGGGGAGAAGGCTTCGTGTTGGTTTACGACATCACCGATCGA
GGGAGCTTCGAAGAAGTGCTGCCGCTGAAGAACATCTTAGATGAAGTCAAAAAACCCAAAAACGTGACTC
TCATCTTGGTCGGAAACAAAGCCGACTTGGACCACTCCAGACAAGTGAGCACAGAAGAAGGGGAGAAGCT
GGCGACGGAACTGGCGTGTGCGTTTTACGAATGTTCCGCCTGCACGGGAGAAGGGAACATCACGGAGGTG
TTCTATGAGCTCTGTCGAGAGGTGCGTCGCAGAAGGATGGTGCAGGGCAAGACAAGGCGCCGCAGCTCCA
CCACACACGTCAAGCAAGCGATTAACAAGATGCTCACCAAAATCAGTAGTTAG

Translation (180 aa):
MAKSAEVKLAIFGRAGVGKSESTYRHQATIDDEVVSMEILDTAGQEDTIQREGHMRWGEGFVLVYDITDR
GSFEEVLPLKNILDEVKKPKNVTLILVGNKADLDHSRQVSTEEGEKLATELACAFYECSACTGEGNITEV
FYELCREVRRRRMVQGKTRRRSSTTHVKQAINKMLTKISS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH