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Report for CCDS52398.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
52398.1 Public Mus musculus 7 Tufm 23 108 98 CCDS HistoryNCBI Gene:233870Re-query CCDS DB by CCDS ID:52398.1Re-query CCDS DB by GeneID:233870See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 52398.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000106392.9 ENSMUSP00000102000.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000106392.9Link to Ensembl Protein Viewer:ENSMUSP00000102000.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000106392Re-query CCDS DB by Protein ID:ENSMUSP00000102000
Original member Current member NCBI NM_001163713.1 NP_001157185.1 Accepted alive Link to Nucleotide Sequence:NM_001163713.1Link to Protein Sequence:NP_001157185.1Re-query CCDS DB by Nucleotide ID:NM_001163713Re-query CCDS DB by Protein ID:NP_001157185Link to BLAST:NP_001157185.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001157185.1 435 Q8BFR5-2 435 100% 0 0

Chromosomal Locations for CCDS 52398.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 126487448 126487490 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 126487588 126487782 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 126488260 126488426 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 126488650 126488754 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 126488837 126489001 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 126489120 126489252 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 126489336 126489440 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 126489552 126489911 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 126490321 126490355 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1308 nt):
ATGGCGGCAGCCACTCTATTGCGAGCGACGCCCCGCTTCAGCGGTCTCTGCGCCAGCCCGACCCCATTTC
TGCAAGGTCGGCTGCGGCCGCTGAAGGCTCCCGCATCACCCTTCTTGTGTCGCGGCCTAGCTGTGGAGGC
CAAGAAGACTTATGTACGCGACAAGCCCCATGTGAATGTGGGTACCATCGGACATGTGGACCATGGCAAG
ACCACCCTGACTGCAGCCATCACGAAAATTCTAGCCGAGGGAGGTGGAGCTAAGTTCAAGAAGTACGAGG
AGATAGACAATGCCCCAGAGGAGCGAGCTCGGGGCATCACCATCAATGCAGCCCATGTGGAGTATAGCAC
TGCTGCCCGACACTATGCCCACACAGACTGTCCTGGTCATGCAGATTATGTTAAGAATATGATCACAGGC
ACTGCCCCCCTGGATGGCTGTATCCTGGTGGTGGCAGCTAATGATGGCCCCATGCCCCAGACCCGAGAGC
ACTTACTGCTAGCTAAACAGATTGGGGTAGAACATGTTGTGGTGTACGTGAACAAGGCAGACGCTGTCCA
GGACTCAGAGATGGTGGAGTTAGTCGAGCTGGAGATCCGGGAGCTGCTCACCGAGTTTGGCTATAAAGGA
GAGGAAACTCCAGTCATCGTAGGCTCGGCTCTCTGTGCCCTTGAGCAACGTGACCCTGAGCTAGGCGTGA
AGTCAGTGCAGAAGCTCCTGGATGCTGTGGACACCTACATCCCAGTGCCCACCCGGGACCTGGACAAGCC
CTTCCTGCTCCCTGTAGAGTCAGTCTACTCTATTCCTGGCCGGGGCACAGTGGTGACAGGTACATTAGAG
CGTGGCATTTTGAAGAAAGGAGATGAGTGTGAGTTGCTGGGACATAACAAGAACATCCGCACTGTGGTGA
CAGGCATTGAGATGTTCCACAAGAGCCTGGAGAGGGCTGAGGCAGGGGATAACCTGGGTGCTCTGGTCCG
AGGCTTAAAGCGCGAAGATTTGAGGCGTGGCTTGGTCATGGTCAAGCCAGGCTCCATCCAACCCCACCAG
AAGGTGGAGGCCCAGGTGAGGGCTCCAGTGCTGAGTGGTTTCCCTTGCTTAGAAGCAGGACTTGTAGCTA
AGCCATTCCATCCTTACTGCTTCTCTCCTCTAGGTTTATATCCTCAGCAAGGAGGAAGGTGGCCGCCACA
AACCCTTTGTATCTCATTTCATGCCCGTCATGTTCTCCCTGACCTGGGACATGGCCTGTCGAGTCATCTT
GCCTCCAGGGAAGGAACTTGCCATGCCTGGAGAGGACTTGAAGCTTAG

Translation (435 aa):
MAAATLLRATPRFSGLCASPTPFLQGRLRPLKAPASPFLCRGLAVEAKKTYVRDKPHVNVGTIGHVDHGK
TTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYSTAARHYAHTDCPGHADYVKNMITG
TAPLDGCILVVAANDGPMPQTREHLLLAKQIGVEHVVVYVNKADAVQDSEMVELVELEIRELLTEFGYKG
EETPVIVGSALCALEQRDPELGVKSVQKLLDAVDTYIPVPTRDLDKPFLLPVESVYSIPGRGTVVTGTLE
RGILKKGDECELLGHNKNIRTVVTGIEMFHKSLERAEAGDNLGALVRGLKREDLRRGLVMVKPGSIQPHQ
KVEAQVRAPVLSGFPCLEAGLVAKPFHPYCFSPLGLYPQQGGRWPPQTLCISFHARHVLPDLGHGLSSHL
ASREGTCHAWRGLEA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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