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Report for CCDS52414.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
52414.1 Public Mus musculus 7 Ate1 23 108 98 CCDS HistoryNCBI Gene:11907Re-query CCDS DB by CCDS ID:52414.1Re-query CCDS DB by GeneID:11907See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 52414.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000035458.14 ENSMUSP00000043365.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000035458.14Link to Ensembl Protein Viewer:ENSMUSP00000043365.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000035458Re-query CCDS DB by Protein ID:ENSMUSP00000043365
Original member NCBI NM_001136054.2 NP_001129526.1 Updated not alive Link to Nucleotide Sequence:NM_001136054.2Link to Protein Sequence:NP_001129526.1Re-query CCDS DB by Nucleotide ID:NM_001136054Re-query CCDS DB by Protein ID:NP_001129526
Current member NCBI NM_001136054.3 NP_001129526.1 Accepted alive Link to Nucleotide Sequence:NM_001136054.3Link to Protein Sequence:NP_001129526.1Re-query CCDS DB by Nucleotide ID:NM_001136054Re-query CCDS DB by Protein ID:NP_001129526Link to BLAST:NP_001129526.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001129526.1 516 Q9Z2A5-2 516 100% 0 0

Chromosomal Locations for CCDS 52414.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 130394558 130394736 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 130418448 130418568 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 130464131 130464230 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 130467256 130467437 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 130481683 130481715 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 130503722 130503850 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 130507482 130507699 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 130509007 130509258 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 130510811 130510914 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 130513762 130513824 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 130516105 130516168 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 130519356 130519461 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1551 nt):
ATGGCTTCTTGGAGCGCGCCTTCACCTAGCCTTGTAGAGTATTTTGAGGGCCAGACCTCCTTCCAGTGTG
GCTACTGCAAGAACAAGTTGGGCAGTCGCTCCTATGGCATGTGGGCACATTCCATGACAGTGCAGGATTA
TCAGGATCTTATAGACCGAGGATGGAGAAGAAGTGGGAAATATGTGTACAAACCTGTCATGGATCAAACA
TGCTGTCCTCAGTATACAATAAGGTGTCATCCTTTACAGTTTCAGCCATCAAAATCTCACAAGAAAGTTT
TGAAAAAAATGCTGAAATTTCTGGCTAAAGGAGAGATCTCGAAAGGCAATTGTGAGGATGAGCCCATGGA
TTCTACAGTGGAGGATGCTGTTGACGGTGACTTTGCATTAATTAACAAGCTGGATATAAAGTGTGATCTC
AAAACACTCAGTGACCTCAAAGGAAGCATAGAGAGTGAAGAGAAGGAGAAAGAAAAGAGTATAAAGAAAG
AAGGGTCTAAAGAATTCATTCATCCACAATCTATAGAGGAGAAGTTGGGCTCTGGTGAACCATCACATCC
AATCAAAGTTCATATTGGTCCTAAGCCAGGCAAAGGGGCTGACTTGAGTAAGCCTCCATGTCGGAAAGCA
AGGGAAATGAGGAAAGAAAGGCAAAGATTAAAACGGATGCAGCAGGCCTCAGCTGCAGCCTCGGAGGCTC
AAGGTCAGCCAGTCTGTTTGTTACCAAAGGCTAAATCCAACCAGCCCAAGTCACTGGAAGATTTGATTTT
TCAATCTTTACCAGAAAATGCATCGCACAAGTTAGAGGTGAGGCTAGTACCTGCCTCCTTTGAGGACCCA
GAGTTCAACTCATCCTTCAACCAGTCCTTTTCTTTATATACCAAGTATCAAGTGGCTATACACCAGGAAG
CACCTGAAATATGTGAAAAGTCTGAGTTTACAAGATTCCTTTGCAGCTCACCATTGGAGGCAGAGCACCC
TGCTGATGGACCAGAATGTGGTTATGGCTCCTTTCACCAGCAGTACTGGCTCGATGGGAAGATCATTGCT
GTGGGGGTGTTAGACATTCTCCCGTACTGTGTGTCTTCTGTGTATCTCTACTACGATCCTGATTATTCAT
TTCTGTCTTTGGGTGTCTATTCAGCATTAAGAGAAATTGCTTTTACTAGACAACTGCATGAGAAAACATC
GCAACTCAGCTATTATTATATGGGTTTCTACATTCATTCCTGTCCCAAGATGAGATACAAGGGTCAATAT
AGACCTTCTGATTTGCTGTGTCCTGAGACGTATGTCTGGGTGCCCATTGAGCAGTGCCTGCCTTCTCTGG
ACAACTCCAAGTACTGCCGTTTCAACCAGGACCCCGAAGCAGAGGATGAAGGACGCAGTAAGGAACTTGA
CCGACTAAGGGTGTTTCACAGACGATCTGCCATGCCTTACGGTGTTTATAAGAATCACCAAGAAGACCCA
AGTGAGGAGGCTGGTGTGCTGGAGTATGCAAACCTCGTAGGACAGAAGTGCTCGGAGAGGATGCTGCTGT
TCAGACACTGA

Translation (516 aa):
MASWSAPSPSLVEYFEGQTSFQCGYCKNKLGSRSYGMWAHSMTVQDYQDLIDRGWRRSGKYVYKPVMDQT
CCPQYTIRCHPLQFQPSKSHKKVLKKMLKFLAKGEISKGNCEDEPMDSTVEDAVDGDFALINKLDIKCDL
KTLSDLKGSIESEEKEKEKSIKKEGSKEFIHPQSIEEKLGSGEPSHPIKVHIGPKPGKGADLSKPPCRKA
REMRKERQRLKRMQQASAAASEAQGQPVCLLPKAKSNQPKSLEDLIFQSLPENASHKLEVRLVPASFEDP
EFNSSFNQSFSLYTKYQVAIHQEAPEICEKSEFTRFLCSSPLEAEHPADGPECGYGSFHQQYWLDGKIIA
VGVLDILPYCVSSVYLYYDPDYSFLSLGVYSALREIAFTRQLHEKTSQLSYYYMGFYIHSCPKMRYKGQY
RPSDLLCPETYVWVPIEQCLPSLDNSKYCRFNQDPEAEDEGRSKELDRLRVFHRRSAMPYGVYKNHQEDP
SEEAGVLEYANLVGQKCSERMLLFRH


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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