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Report for CCDS52455.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
52455.1 Public Mus musculus 7 Tnnt3 23 108 98 CCDS HistoryNCBI Gene:21957Re-query CCDS DB by CCDS ID:52455.1Re-query CCDS DB by GeneID:21957See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 52455.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000105955.7 ENSMUSP00000101575.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000105955.7Link to Ensembl Protein Viewer:ENSMUSP00000101575.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000105955Re-query CCDS DB by Protein ID:ENSMUSP00000101575
Original member Current member NCBI NM_001163668.1 NP_001157140.1 Accepted alive Link to Nucleotide Sequence:NM_001163668.1Link to Protein Sequence:NP_001157140.1Re-query CCDS DB by Nucleotide ID:NM_001163668Re-query CCDS DB by Protein ID:NP_001157140Link to BLAST:NP_001157140.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001157140.1 255 Q9QZ47-6 255 99.6078% 0 1

Chromosomal Locations for CCDS 52455.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 142501638 142501654 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 142501829 142501842 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 142502740 142502757 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 142504048 142504065 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 142504250 142504264 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 142505516 142505530 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 142508335 142508353 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 142510664 142510709 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 142511257 142511373 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 142511465 142511542 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 142512036 142512149 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 142512256 142512365 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 142512532 142512622 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 142514326 142514366 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 142515776 142515830 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (768 nt):
ATGTCTGACGAGGAAACTGAACAAGTTGAGGAACAATACGAAGAGGAAGAGGAGGCCCAAGAGGAAGAAG
TCCAGGAGGAAGAGGAAGTCCAAGAAGAGGAGAAACCAAGACCCAAACTTACTGCTCCTAAGATCCCGGA
AGGGGAGAAAGTAGACTTTGATGACATCCAGAAGAAGCGTCAAAACAAGGACCTCATGGAGCTCCAAGCC
CTCATTGACAGCCACTTTGAAGCTAGAAAGAAAGAAGAAGAGGAGCTAATCGCACTTAAAGAAAGAATTG
AGAAGCGCCGTGCAGAGAGGGCTGAGCAGCAAAGAATTCGCGCTGAGAAGGAGCGGGAACGCCAGAACAG
ATTGGCGGAGGAGAAGGCCAGAAGAGAGGAGGAGGATGCCAAGAGGAGAGCTGAAGATGACATGAAGAAG
AAAAAGGCTCTGTCCTCCATGGGTGCCAACTACAGCAGCTACCTGGCCAAGGCTGACCAGAAGAGAGGCA
AGAAACAGACAGCCCGGGAAATGAAAAAGAAGATTCTTGCCGAAAGGCGCAAGCCTCTGAACATTGACCA
TCTTAGCGATGACAAGCTGAGGGACAAGGCCAAGGAACTCTGGGATACCTTGTACCAACTGGAGACTGAC
AAATTCGAGTTTGGGGAGAAGCTGAAACGTCAGAAATATGATATCACCACCCTCAGGAGCCGCATTGACC
AAGCCCAGAAGCACAGCAAGAAGGCCGGTGCCACAGCCAAGGGCAAAGTCGGTGGGCGCTGGAAGTAA

Translation (255 aa):
MSDEETEQVEEQYEEEEEAQEEEVQEEEEVQEEEKPRPKLTAPKIPEGEKVDFDDIQKKRQNKDLMELQA
LIDSHFEARKKEEEELIALKERIEKRRAERAEQQRIRAEKERERQNRLAEEKARREEEDAKRRAEDDMKK
KKALSSMGANYSSYLAKADQKRGKKQTAREMKKKILAERRKPLNIDHLSDDKLRDKAKELWDTLYQLETD
KFEFGEKLKRQKYDITTLRSRIDQAQKHSKKAGATAKGKVGGRWK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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