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Report for CCDS52463.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
52463.1 Public Mus musculus 7 Cdkn1c 23 108 98 CCDS HistoryNCBI Gene:12577Re-query CCDS DB by CCDS ID:52463.1Re-query CCDS DB by GeneID:12577See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 52463.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000167912.8 ENSMUSP00000128828.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000167912.8Link to Ensembl Protein Viewer:ENSMUSP00000128828.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000167912Re-query CCDS DB by Protein ID:ENSMUSP00000128828
Original member NCBI NM_001161624.1 NP_001155096.1 Updated not alive Link to Nucleotide Sequence:NM_001161624.1Link to Protein Sequence:NP_001155096.1Re-query CCDS DB by Nucleotide ID:NM_001161624Re-query CCDS DB by Protein ID:NP_001155096
Current member NCBI NM_001161624.2 NP_001155096.1 Accepted alive Link to Nucleotide Sequence:NM_001161624.2Link to Protein Sequence:NP_001155096.1Re-query CCDS DB by Nucleotide ID:NM_001161624Re-query CCDS DB by Protein ID:NP_001155096Link to BLAST:NP_001155096.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001155096.1 348 P49919-1 348 100% 0 0

Chromosomal Locations for CCDS 52463.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 143459117 143459250 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 143459795 143460707 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1047 nt):
ATGGGCATGTCCGACGTGTACCTCCGCAGCAGAACAGCGATGGAACGCTTGGCCTCCAGCGATACCTTCC
CAGTGATAGCGCGTAGCAGCGCCTGCCGCAGCCTCTTCGGGCCTGTAGACCACGAGGAGCTGGGCCGCGA
GCTGCGGATGCGCCTGGCCGAGCTGAACGCCGAGGACCAGAACCGCTGGGACTTCAACTTCCAGCAGGAT
GTGCCTCTTCGAGGCCCTGGTCGTCTGCAGTGGATGGAGGTGGACAGCGAGTCTGTGCCCGCCTTCTACC
GCGAGACGGTGCAGGTGGGGCGCTGTCGCCTGCAGCTGGGGCCCCGGCCACCCCCGGTGGCCGTGGCTGT
CATCCCGCGTTCTGGGCCGCCGGCTGGCGAGGCCCCCGACGGCCTAGAGGAGGCGCCTGAGCAGCCGCCC
AGCGCCCCAGCCTCGGCCGTGGTCGCGGAGCCCACCCCACCCGCGACCCCGGCCCCGGCTTCAGATCTGA
CCTCAGACCCAATTCCGGAGGTGACCCTGGTCGCGACCTCCGACCCGACTCCGGACCCGATCCCGGACGC
GAACCCGGACGTGGCGACTCGGGACGGCGAGGAACAGGTCCCTGAGCAGGTCTCTGAGCAGGGCGAGGAG
TCGGGTGCTGAGCCGGGTGATGAGCTGGGAACTGAGCCGGTCTCTGAGCAGGGCGAGGAGCAGGGCGCAG
AGCCGGTCGAGGAGAAGGACGAGGAGCCGGAGGAGGAGCAGGGCGCGGAGCCGGTCGAGGAGCAGGGTGC
GGAGCCGGTCGAGGAGCAGAATGGGGAGCCGGTCGAGGAGCAGGACGAGAATCAAGAGCAGCGCGGCCAG
GAGCTGAAGGACCAGCCTCTCTCGGGGATTCCAGGACGTCCTGCACCCGGGACTGCTGCGGCCAATGCGA
ACGACTTCTTCGCCAAGCGCAAGAGAACTGCGCAGGAGAACAAGGCGTCGAACGACGTCCCTCCAGGGTG
TCCCTCTCCAAACGTGGCTCCTGGGGTGGGCGCGGTGGAGCAGACCCCGCGCAAACGTCTGAGATGA

Translation (348 aa):
MGMSDVYLRSRTAMERLASSDTFPVIARSSACRSLFGPVDHEELGRELRMRLAELNAEDQNRWDFNFQQD
VPLRGPGRLQWMEVDSESVPAFYRETVQVGRCRLQLGPRPPPVAVAVIPRSGPPAGEAPDGLEEAPEQPP
SAPASAVVAEPTPPATPAPASDLTSDPIPEVTLVATSDPTPDPIPDANPDVATRDGEEQVPEQVSEQGEE
SGAEPGDELGTEPVSEQGEEQGAEPVEEKDEEPEEEQGAEPVEEQGAEPVEEQNGEPVEEQDENQEQRGQ
ELKDQPLSGIPGRPAPGTAAANANDFFAKRKRTAQENKASNDVPPGCPSPNVAPGVGAVEQTPRKRLR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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