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Report for CCDS52482.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
52482.1 Public Mus musculus 8 Mcf2l 23 108 98 CCDS HistoryNCBI Gene:17207Re-query CCDS DB by CCDS ID:52482.1Re-query CCDS DB by GeneID:17207See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 52482.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000110867.8 ENSMUSP00000106491.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000110867.8Link to Ensembl Protein Viewer:ENSMUSP00000106491.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000110867Re-query CCDS DB by Protein ID:ENSMUSP00000106491
Original member Current member NCBI NM_001159486.2 NP_001152958.1 Accepted alive Link to Nucleotide Sequence:NM_001159486.2Link to Protein Sequence:NP_001152958.1Re-query CCDS DB by Nucleotide ID:NM_001159486Re-query CCDS DB by Protein ID:NP_001152958Link to BLAST:NP_001152958.1

Chromosomal Locations for CCDS 52482.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 8 (NC_000074.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 12949664 12949676 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 12963164 12963247 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 12972979 12973093 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 12984860 12984950 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 12993829 12993948 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 12996610 12996726 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 12997246 12997395 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 12998369 12998493 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 12999949 13000063 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 13000743 13000862 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 13001282 13001473 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 13001811 13002002 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 13002638 13002797 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 13003575 13003648 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 13003885 13003961 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 13005450 13005516 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 13006725 13006840 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 13007685 13007754 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 13009467 13009559 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 13009654 13009746 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 13010416 13010541 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 13011379 13011600 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 13011729 13011821 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 13012801 13012879 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 13012998 13013064 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 13013535 13013650 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 13017347 13017468 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 13018061 13018173 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 13018696 13018799 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 13018886 13018965 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3306 nt):
ATGAGACCCACAGATGAAATCATGCACCAGGACATCGTCCCGCTCTGTGCCGCTGACATCCAGGAGCAGC
TGAAGAAGCGCTTTGCTTACCTGTCTGGTGGGCGGGGACAGGACGGAAGCCCAGTCATCACCTTCCCTGA
CTACCCAGCCTTCAGCGAGATCCCGGACAAGGAGTTCCAGAATGTCATGACCTATCTCACCAGCATCCCC
AGTTTGCAAGATGCTGGCATTGGATTCATCTTGGTCATAGACCGAAGGCAGGACAAATGGACCTCTGTGA
AGGCATCCGTCCTGCGGATAGCCGCATCTTTCCCAGCCAACCTGCAGCTTGTCCTTGTTCTTCGGCCCAC
GGGCTTTTTCCAGAGGACTCTCTCGGACATTGCCTTCAAGTTCAACAGAGATGAGTTTAAGATGAAAGTG
CCGGTCATGATGCTAAGCTCAGTGCCAGAACTACACGGCTACATTGATAAGTCGCAGCTGACCGAGGACC
TCGGGGGGACCCTGGACTACTGCCACTCCAGGTGGCTGTGCCACCGCACAGCAATTGAAAGCTTCGCCCT
GATGGTGAAGCAGACAGCCCAGATGCTGCAGGCCTTTGGGACCGAGCTGGCTGAAACAGAGCTGCCGAAT
GACGTCCAGTCAACCAGCCTGGTGCTCAGCGCACACACAGAGAAGAAGGCCAAAGTGAAGGAAGATCTGC
AGTTAGCACTGAAGGAGGGGAACAGCATCCTGGAGAGCCTCAGAGAGCCACTGGCTGAGAGCGCGGCCCA
CAGTGTGAACCAGGACCAGCTGGACAATCAGGCCACCGTGCAGAGGCTCCTGGCCCAGCTGAATGAGACG
GAGGCTGCCTTTGACGAATTCTGGGCAAAGCATCAGCAGAAGCTGGAACAGTGCCTGCAGCTGCGGCATT
TTGAGCAAGGTTTCCGGGAGGTCAAAACCACCTTGGATTCCATGTCCCAGAAGATAGCTGCTTTCACGGA
TGTTGGCAACAGCCTGGCCCACGTGCAGCACCTTCTGAAGGACTTGACCGCCTTTGAGGAGAAGTCCAGT
GTGGCTGTGGACAAGGCCCGCGCCCTGTCACTGGAAGGTCAGCAGCTGATTGAGAACAGGCACTACGCTG
TGGACTCCATCCACCCCAAGTGTGAAGAGCTCCAGCACCTCTGTGACCACTTCGCCTCTGAGGTCACCAG
GAGGCGGGGCCTGCTCAGCAAGTCCTTGGAGCTGCATAGCCTCCTGGAGACGTCCATGAAGTGGAGCGAC
GAGGGGATCTTCCTGCTGGCCTCGCAGCCTGTGGACAAATGCCAGTCCCAGGATGGCGCAGAGGCGGCCC
TCCAGGAGATTGAGAAGTTTCTGGAGACCGGTGCAGAAAATAAGATTCAGGAGCTCAATGAGATTTACAA
GGAATACGAATGCATCCTCAACCAGGACCTTCTGGAACACGTGCAAAAAGTCTTTCAGAAGCAAGAAAGC
ACGGAGGAGATGTTCCACCGCAGGCAAGCCAGCCTGAAGAAACTGGCAGCCAAGCAGACACGGCCTGTGC
AGCCCGTGGCCCCCCGACCAGAGGCGCTTACCAAGTCGCCCTCCCCCTCGCCAGGCTCCTGGCGAAGCTC
TGAGAACTCCAGCTCTGAGGGCAACGCACTCCGCAGAGGGCCCTACAGGAGAGCCAAGAGCGAAATGAGT
GAACCCCGGCAGGGCCGCACCAGCTCCACAGGGGAAGAGGAAGAGAGCCTGGCCATCCTGCGCAGACACG
TGATGAATGAGCTTCTGGACACCGAGCGGGCCTACGTGGAGGAGCTGCTCTGTGTCTTAGAGGGCTATGC
CGCAGAGATGGATAACCCCTTGATGGCACACCTCATCTCAACAGGCCTGCAAAACAAGAAGAACATTCTG
TTTGGAAACATGGAGGAAATCTATCATTTTCACAACAGAATATTCCTGCGGGAGCTGGAGAGCTGCATAG
ACTGCCCAGAGCTGGTGGGGAGGTGCTTTCTGGAAAGGATGGAGGAGTTCCAGATCTATGAGAAGTACTG
TCAGAACAAGCCACGCTCTGAGAGCCTGTGGAGGCAGTGCTCTGACTGCCCCTTCTTCCAGGAGTGTCAG
AAGAAGCTGGACCACAAGCTGAGCCTGGACTCCTACCTGCTGAAACCTGTGCAGAGGATAACCAAGTACC
AGCTGCTGCTCAAGGAAATGCTGAAGTACAGCAAGCACTGTGAAGGGGCAGAGGACCTGCAGGAGGCGCT
GAGCTCCATCCTGGGCATCCTCAAGGCTGTGAACGACTCCATGCATCTCATCGCCATCACTGGCTATGAT
GGAAACCTTGGCGACCTGGGGAAGCTGCTGATGCAAGGTTCCTTCAGCGTGTGGACAGACCACAAGAAGG
GCCACACCAAAGTGAAGGAGCTAGCCAGGTTCAAGCCCATGCAGCGGCACCTGTTTCTGCACGAGAAGGC
CGTCCTCTTCTGCAAGAAGAGGGAGGAGAATGGGGAGGGATACGAGAAGGCTCCTTCCTACAGCTACAAG
CAGTCCTTGAATATGACGGCTGTCGGCATCACAGAGAACGTGAAGGGTGACACCAAGAAGTTCGAGATCT
GGTACAACGCAAGGGAGGAGGTTTATATCATTCAGGCGCCAACCCCCGAGATTAAAGCAGCGTGGGTGAA
TGAGATTCGGAAGGTGCTGACCAGCCAGCTGCAGGCTTGCCGGGAGGCCAGCCAGCACCGAGCCCTGGAG
CAGTCCCACAGCCTTCCTTTGCCCACGCCATCCAGCACCAGTCCCACAAAAGGGAACACAAGAAATGTCA
AGAAGCTCGAAGACCGGAAGACGGACCCGCTCAGCCTGGAAGGCTACGTGAGCTCATCGTTACCAAAGCC
CCCTGAGAAGGGCAAAGGCTGGAGCAAAACATCCCACTCCCTGGAGGCCCCTGAGGAGGACGGAGGCTGG
TCCAGTGCTGAGGAACTCATCAACTCATCTGATGCTGAGGAAGACGGTGGAGTGGGCCCTAAGAAGCTGG
TGCCGGGTAAATACACAGTGGTGATGGATGATGAGAAAGGGGGCCCTGACACCCTTGCCATGAGGAGTGG
AGATATGGTGGAGGTGGTGGAAGAAGGCGCTGAGGGCCTCTGGTATGTTCGGGACCTGACCAGCAGCAAG
GAGGGATGGGTGCCAGCCAGCAGCCTATCCACCCTCCTGGGCAAATCCAGTTCAGCCCAGTGTCTGAGCA
GCTCAGGTGTGCAGAGCAAAGGGCCAGAGCCGAAGCCTGTCTCCACTGGTTTCCCGCAGACTCCAGCCCA
GGGTCAGCCGTGCTGA

Translation (1101 aa):
MRPTDEIMHQDIVPLCAADIQEQLKKRFAYLSGGRGQDGSPVITFPDYPAFSEIPDKEFQNVMTYLTSIP
SLQDAGIGFILVIDRRQDKWTSVKASVLRIAASFPANLQLVLVLRPTGFFQRTLSDIAFKFNRDEFKMKV
PVMMLSSVPELHGYIDKSQLTEDLGGTLDYCHSRWLCHRTAIESFALMVKQTAQMLQAFGTELAETELPN
DVQSTSLVLSAHTEKKAKVKEDLQLALKEGNSILESLREPLAESAAHSVNQDQLDNQATVQRLLAQLNET
EAAFDEFWAKHQQKLEQCLQLRHFEQGFREVKTTLDSMSQKIAAFTDVGNSLAHVQHLLKDLTAFEEKSS
VAVDKARALSLEGQQLIENRHYAVDSIHPKCEELQHLCDHFASEVTRRRGLLSKSLELHSLLETSMKWSD
EGIFLLASQPVDKCQSQDGAEAALQEIEKFLETGAENKIQELNEIYKEYECILNQDLLEHVQKVFQKQES
TEEMFHRRQASLKKLAAKQTRPVQPVAPRPEALTKSPSPSPGSWRSSENSSSEGNALRRGPYRRAKSEMS
EPRQGRTSSTGEEEESLAILRRHVMNELLDTERAYVEELLCVLEGYAAEMDNPLMAHLISTGLQNKKNIL
FGNMEEIYHFHNRIFLRELESCIDCPELVGRCFLERMEEFQIYEKYCQNKPRSESLWRQCSDCPFFQECQ
KKLDHKLSLDSYLLKPVQRITKYQLLLKEMLKYSKHCEGAEDLQEALSSILGILKAVNDSMHLIAITGYD
GNLGDLGKLLMQGSFSVWTDHKKGHTKVKELARFKPMQRHLFLHEKAVLFCKKREENGEGYEKAPSYSYK
QSLNMTAVGITENVKGDTKKFEIWYNAREEVYIIQAPTPEIKAAWVNEIRKVLTSQLQACREASQHRALE
QSHSLPLPTPSSTSPTKGNTRNVKKLEDRKTDPLSLEGYVSSSLPKPPEKGKGWSKTSHSLEAPEEDGGW
SSAEELINSSDAEEDGGVGPKKLVPGKYTVVMDDEKGGPDTLAMRSGDMVEVVEEGAEGLWYVRDLTSSK
EGWVPASSLSTLLGKSSSAQCLSSSGVQSKGPEPKPVSTGFPQTPAQGQPC


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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