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Report for CCDS52543.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
52543.1 Under review, update Mus musculus 8 Msr1 23 108 98 CCDS HistoryNCBI Gene:20288Re-query CCDS DB by CCDS ID:52543.1Re-query CCDS DB by GeneID:20288See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)


Attributes
CDS uses downstream AUG

Sequence IDs included in CCDS 52543.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000170091.2 ENSMUSP00000132535.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000170091.2Link to Ensembl Protein Viewer:ENSMUSP00000132535.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000170091Re-query CCDS DB by Protein ID:ENSMUSP00000132535
Original member NCBI NM_031195.2 NP_112472.2 Updated not alive Link to Nucleotide Sequence:NM_031195.2Link to Protein Sequence:NP_112472.2Re-query CCDS DB by Nucleotide ID:NM_031195Re-query CCDS DB by Protein ID:NP_112472
Current member NCBI NM_031195.3 NP_112472.3 Pending alive Link to Nucleotide Sequence:NM_031195.3Link to Protein Sequence:NP_112472.3Re-query CCDS DB by Nucleotide ID:NM_031195Re-query CCDS DB by Protein ID:NP_112472Link to BLAST:NP_112472.3

Chromosomal Locations for CCDS 52543.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 8 (NC_000074.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 39605972 39605982 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 39608085 39608138 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 39611632 39611721 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 39615742 39615822 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 39619878 39620064 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 39623926 39624335 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 39631281 39631394 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 39632720 39632825 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 39642609 39642620 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1065 nt):
ATGACAAAAGAGATGACAGAGAATCAGAGGCTCTGCCCTCATGAACAAGAGGATGCTGACTGCAGTTCAG
AATCCGTGAAATTTGACGCACGTTCAATGACAGCATCCCTTCCTCACAGCACTAAAAATGGCCCCTCCCT
TCAGGAGAAGTTGAAGTCCTTCAAGGCTGCCCTCATTGCTCTCTACCTCCTTGTGTTTGCAGTACTAATA
CCTGTTGTTGGAATAGTAACAGCTCAGCTTTTGAATTGGGAAATGAAGAACTGCTTAGTTTGTTCACTTA
ACACAAGTGACACATCTCAAGGTCCTATGGAAAAAGAAAATACCAGTAAAGTGGAAATGAGATTTACAAT
TATCATGGAACACATGAAGGACATGGAGGAGAGAATCGAAAGCATTTCAAACTCAAAAGCCGACCTTATA
GACACGGAACGCTTCCAGAATTTCAGCATGGCAACTGACCAAAGACTTAATGATATTCTTCTGCAGTTAA
ATTCCTTGATTTCGTCAGTCCAGGAACATGGGAATTCACTGGATGCAATCTCCAAGTCCTTGCAGAGTCT
GAATATGACACTGCTTGATGTTCAACTCCATACAGAAACACTGAATGTCAGAGTCCGTGAATCTACAGCA
AAGCAACAGGAGGACATCAGTAAATTGGAGGAACGTGTGTACAAAGTATCAGCAGAAGTCCAGTCTGTGA
AAGAAGAACAAGCGCACGTGGAACAGGAAGTAAAACAGGAAGTGAGAGTATTGAACAACATCACCAACGA
CCTCAGACTGAAGGACTGGGAACACTCACAGACACTGAAAAACATCACCTTCATTCAAGGGCCTCCTGGA
CCCCAAGGTGAAAAGGGAGACAGAGGGCTTACTGGACAAACTGGTCCACCTGGTGCTCCAGGAATAAGAG
GTATTCCAGGTGTTAAAGGTGATCGGGGACAAATTGGCTTCCCTGGAGGTCGAGGAAACCCAGGAGCACC
AGGAAAGCCAGGGAGGTCGGGATCTCCTGGACCTAAAGGACAAAAGGGAGAGAAGGGGAGTGTAGGCGGA
TCAAGATCAGTATAA

Translation (354 aa):
MTKEMTENQRLCPHEQEDADCSSESVKFDARSMTASLPHSTKNGPSLQEKLKSFKAALIALYLLVFAVLI
PVVGIVTAQLLNWEMKNCLVCSLNTSDTSQGPMEKENTSKVEMRFTIIMEHMKDMEERIESISNSKADLI
DTERFQNFSMATDQRLNDILLQLNSLISSVQEHGNSLDAISKSLQSLNMTLLDVQLHTETLNVRVRESTA
KQQEDISKLEERVYKVSAEVQSVKEEQAHVEQEVKQEVRVLNNITNDLRLKDWEHSQTLKNITFIQGPPG
PQGEKGDRGLTGQTGPPGAPGIRGIPGVKGDRGQIGFPGGRGNPGAPGKPGRSGSPGPKGQKGEKGSVGG
SRSV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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