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Report for CCDS52672.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
52672.1 Public Mus musculus 8 Wdr59 23 108 98 CCDS HistoryNCBI Gene:319481Re-query CCDS DB by CCDS ID:52672.1Re-query CCDS DB by GeneID:319481See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 52672.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000034437.7 ENSMUSP00000034437.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000034437.7Link to Ensembl Protein Viewer:ENSMUSP00000034437.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000034437Re-query CCDS DB by Protein ID:ENSMUSP00000034437
Original member NCBI NM_001170743.1 NP_001164214.1 Updated not alive Link to Nucleotide Sequence:NM_001170743.1Link to Protein Sequence:NP_001164214.1Re-query CCDS DB by Nucleotide ID:NM_001170743Re-query CCDS DB by Protein ID:NP_001164214
Current member NCBI NM_001170743.2 NP_001164214.1 Accepted alive Link to Nucleotide Sequence:NM_001170743.2Link to Protein Sequence:NP_001164214.1Re-query CCDS DB by Nucleotide ID:NM_001170743Re-query CCDS DB by Protein ID:NP_001164214Link to BLAST:NP_001164214.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001164214.1 993 Q8C0M0-3 993 100% 0 0

Chromosomal Locations for CCDS 52672.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 8 (NC_000074.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 111450844 111451079 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 111458611 111458753 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 111458923 111459049 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 111460583 111460655 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 111460762 111460912 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 111462156 111462268 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 111465789 111465870 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 111466789 111466922 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 111472630 111472686 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 111476044 111476197 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 111479308 111479377 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 111480443 111480599 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 111480756 111480851 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 111481860 111482024 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 111485090 111485214 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 111485338 111485470 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 111486916 111486995 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 111490292 111490448 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 111492695 111492772 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 111494248 111494364 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 111496807 111496895 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 111498572 111498609 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 111501037 111501117 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 111502482 111502567 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 111504335 111504470 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 111505892 111505941 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 111521928 111521981 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2982 nt):
ATGGCGGCGCGCTGGAGCAGCGAGAACGTGGTGGTGGAGTTTCGAGACTCTCAGGCAACTGCCATGTCTG
TGGACTGTCTTGGGCAGCATGCAGTGCTTTCTGGCCGACGATTCCTGTACATCGTCAATCTAGATGCCCC
TTTTGAAGGTCACCGGAAGATCTCCCGCCAGAGCAAATGGGACATTGGAGCTGTGCAGTGGAACCCTCAT
GACAGCTTCGCACACTATTTTGCAGCTTCGAGTAATCAACGGGTCGACCTTTATAAGTGGAAAGATGGCA
GCGGGGAAGTTGGTACAACTTTACAGGGGCACACTCGAGTTATCAGCGACTTGGACTGGGCAGTGTTTGA
GCCAGATCTCCTGGTCACCAGCTCTGTGGACACCTACATCTACATCTGGGATATCAAAGACACAAGGAAA
CCTACTGTTGCACTGTCGGCTGTAGCTGGTGCCTCCCAGGTCAAATGGAATAAGAAGAACGCCAACTACC
TTGCCACCAGTCACGATGGTGACGTACGGATATGGGACAAGCGAAAACCCAGTACAGCTGTGGAATATCT
AGCAGCCCACCTCTCCAAGATCCACGGCCTGGACTGGCACCCAGACAGTGAGCACATCTTTGCCACCTCC
AGTCAAGATAACTCTGTCAAGTTCTGGGATTACCGCCAGCCTCGGAAATACCTCAATATCCTCCCTTGCC
AGGTGCCTGTCTGGAAAGCCAGATACACGCCTTTCAGCAACGGGCTAGTGACCGTGATGGTTCCCCAGCT
GCGGAGGGAGAACAGCCTGCTCCTGTGGAACGCGTCTGACTTGAACGCTCCAGTTCACACCTTTGTGGGT
CATGATGACGTGGTGCTGGAGTTCCAGTGGAGGAGGCAGAAGGAAGGATCCAAGGACTATCAACTGGTTA
CATGGTCCCGTGATCAGACCTTGAGAATGTGGCGAGTGGACTATCAAATGCAGAGGCTCTGTGCCAATGA
CATACTGGATGGTGTTGATGAGTTCATTGAGAGCATCTCTCTCCTGCCGGAACCAGAGAAGACCCCACAT
CCTCAAGACATAGATCACCAGCCCAGCTTAAGCCATGGAGAGGAAGATGCCATAAAGGAAGACCCTCCCA
GCAGTTTGCTGGAAGAGAAGAGATCAGACCAACTAGGCCTCCCCCAGACTCTGCAACAGGAGTTCTCCTT
GATCAACGTGCAGATCCGGAATGTCAATGTGGAGATGGACGCTGCAGACCGGAGCTGCACAGTGTCTGTG
CACTGCAGCAACCACCGTGTGAAGATGCTGGTGACCTTCCCGGCGCAGTACCCTAACAACGCTGCTCCTT
CCTTCCAGTTCATTAATCCTACCACTATCACGTCTGCCGTGAAGGCCAAGCTGCTGAAGATCCTAAAGGA
CACTTCACTGCAGAAAGTGAAACGCAACCAGAGCTGTTTGGAGCCTTGCCTGCGCCAGCTTGTCTCGTGC
CTTGAGTCTTTTGTGAACCAAGAGGACAGTGCTTCTAGCAACCCATTTGCACTCCAAAACTCTGTCACAC
CACCCTTGCCGACATTTGCACGGGTGACCACTGCCTACGGCTCCTACCAGGATGCCAACATTCCCTTTCC
TAGGACCTCTGGGGCCAGGTTCTGTGGAGCAGGTTACCTGGTGTACTTCACACGACCCATGACGATGCAT
CGAGCAGTGTCTCCCACAGAGCCTACTCCTAGGTCTCTCTCAGCCCTGTCTGCTTATCATACTGGTTTGA
TTGCACCAATGAAGATCCGCACCGAGGCCCCTGGGAACCTGCGTCTGTACAGTGGGAGCCCAACTCGCAG
TGAGAAAGAGCAGGTCTCCATCAGTTCCTTCTATTACAAGGAACGGATGTCTCCTCGCTCTGCCCGGCGA
CGTTGGTCCATACAAGCAATTAACGACTTCCCGAAATCGAGGAGGTGGAAGAGTAAGCGGGAAGGCTCTG
ACTCCGGCAACCGACCCATTAAGGCTGCTGGCAAGGTCATCATCCAGGATGTCTCGTGCCTCCTTCCCGT
TCATAAGTCCTTGGGAGAGCTGTACATATTGAATGTGAACGACACTCAGGAGACATGTCAGAAGAATGCC
ACTTCTGCCATGCTTGTGGGAAGGAAGGATCTTGTCCAGGTTTGGTCGCTGGCTACGGTAGCTACAGATC
TTTGCCTTGGGCCGAAGTCTGACCCAGATTTGGAAACACCTTGGGCTCGACATCCATTTGGGCGACAACT
GCTGGAGTCCCTACTGGCTCACTATTGCCAACTCCGAGATGTTCAGACCTTGGCTATGCTCTGTAGCGTG
TTTGAAGCCCAGTCCCGGCCTCAGGGCTTACCAAACCCTTTTGGGCCTTTCCCTAATCGTTCTTCTAATC
TTGTGGTGTCCCACAGCCGCTATCCCAGCTTCACCTCCTCGGGGTCCTGCTCCAGCATGTCAGATCCAGG
GTTCAACACCGGTGGCTGGAACATAGCAGGAAGAGAGACAGAACACATATCTTCACCTTGGGGGGAGTCT
TCGCCAGAGGAGCTCCGCTTTGGGAGTCTGACCTACAGTGACCCCCGGGAGCGGGAACGAGACCAGCATG
ATAAAAACAAAAGGCTCCTGGACCCTGCCAATACCCAGCAGTTTGACGACTTTAAGAAGTGCTACGGAGA
GATCCTCTACCGCTGGGGTCTGAGAGAGAAGCGAGCAGAAGTGCTGAAGTTTGTGTCCTGCCCTCCTGAC
CCTCACAAAGGGATCGAGTTTGGTGTGTACTGCAGTCACTGTCGGAGCGAGGTCCGTGGCACCCAGTGCG
CCATCTGCAAAGGCTTCACCTTCCAGTGTGCCATCTGCCATGTGGCCGTGCGGGGTTCATCCAACTTCTG
CCTGACCTGTGGGCATGGTGGCCACACGAGCCACATGATGGAGTGGTTTCGGACCCAGGAGGTATGTCCC
ACGGGGTGTGGCTGCCACTGCCTGCTGGAGAGCACCTTCTGA

Translation (993 aa):
MAARWSSENVVVEFRDSQATAMSVDCLGQHAVLSGRRFLYIVNLDAPFEGHRKISRQSKWDIGAVQWNPH
DSFAHYFAASSNQRVDLYKWKDGSGEVGTTLQGHTRVISDLDWAVFEPDLLVTSSVDTYIYIWDIKDTRK
PTVALSAVAGASQVKWNKKNANYLATSHDGDVRIWDKRKPSTAVEYLAAHLSKIHGLDWHPDSEHIFATS
SQDNSVKFWDYRQPRKYLNILPCQVPVWKARYTPFSNGLVTVMVPQLRRENSLLLWNASDLNAPVHTFVG
HDDVVLEFQWRRQKEGSKDYQLVTWSRDQTLRMWRVDYQMQRLCANDILDGVDEFIESISLLPEPEKTPH
PQDIDHQPSLSHGEEDAIKEDPPSSLLEEKRSDQLGLPQTLQQEFSLINVQIRNVNVEMDAADRSCTVSV
HCSNHRVKMLVTFPAQYPNNAAPSFQFINPTTITSAVKAKLLKILKDTSLQKVKRNQSCLEPCLRQLVSC
LESFVNQEDSASSNPFALQNSVTPPLPTFARVTTAYGSYQDANIPFPRTSGARFCGAGYLVYFTRPMTMH
RAVSPTEPTPRSLSALSAYHTGLIAPMKIRTEAPGNLRLYSGSPTRSEKEQVSISSFYYKERMSPRSARR
RWSIQAINDFPKSRRWKSKREGSDSGNRPIKAAGKVIIQDVSCLLPVHKSLGELYILNVNDTQETCQKNA
TSAMLVGRKDLVQVWSLATVATDLCLGPKSDPDLETPWARHPFGRQLLESLLAHYCQLRDVQTLAMLCSV
FEAQSRPQGLPNPFGPFPNRSSNLVVSHSRYPSFTSSGSCSSMSDPGFNTGGWNIAGRETEHISSPWGES
SPEELRFGSLTYSDPRERERDQHDKNKRLLDPANTQQFDDFKKCYGEILYRWGLREKRAEVLKFVSCPPD
PHKGIEFGVYCSHCRSEVRGTQCAICKGFTFQCAICHVAVRGSSNFCLTCGHGGHTSHMMEWFRTQEVCP
TGCGCHCLLESTF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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