NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS52673.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
52673.1 Public Mus musculus 8 Znrf1 23 108 98 CCDS HistoryNCBI Gene:170737Re-query CCDS DB by CCDS ID:52673.1Re-query CCDS DB by GeneID:170737See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 52673.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000171182.7 ENSMUSP00000127956.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000171182.7Link to Ensembl Protein Viewer:ENSMUSP00000127956.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000171182Re-query CCDS DB by Protein ID:ENSMUSP00000127956
Original member NCBI NM_001168622.2 NP_001162093.1 Updated not alive Link to Nucleotide Sequence:NM_001168622.2Link to Protein Sequence:NP_001162093.1Re-query CCDS DB by Nucleotide ID:NM_001168622Re-query CCDS DB by Protein ID:NP_001162093
Current member NCBI NM_001168622.3 NP_001162093.1 Accepted alive Link to Nucleotide Sequence:NM_001168622.3Link to Protein Sequence:NP_001162093.1Re-query CCDS DB by Nucleotide ID:NM_001168622Re-query CCDS DB by Protein ID:NP_001162093Link to BLAST:NP_001162093.1

Chromosomal Locations for CCDS 52673.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 8 (NC_000074.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 111537141 111537564 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 111619206 111619311 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 111621596 111621653 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (588 nt):
ATGGGGGGCAAGCAGAGCACGGCGGCCCGCTCTCGGGGCCCCTTCCCGGGGGTCTCTACGGATGACAGCG
CCGTGCCGCCGCCGGGAGGGGCGCCCCACTTTGGGCACTACCGGACGGGCGGCGGGGCGATGGGGCTGCG
CAGCCGCTCGGTCAGCTCGGTGGCGGGCATGGGCATGGACCCCAGCACGGCCGGAGGGGTGCCCTTTAGT
CTCTACACCCCCGCCTCCCGCGGGACCGGCGACTCCGAGAGGGCGCCGGGCGGCGGAGGGTCCACGTCGG
ACTCCACCTATGCCCACGGCAATGGTTACCAAGAGACCGGCGGCGGTCACCATAGAGACGGGATGCTGTA
CCTGGGCTCCCGAGCCTCGCTGGCGGATGCTCTACCTCTGCACATCGCACCCAGGTGGTTCAGCTCGCAC
AGTGATGATGTGCTGACTAAAGATGCGGGTGAGTGTGTGATCTGCCTGGAGGAGCTGCTTCAGGGGGACA
CGATAGCCAGGCTGCCTTGCCTGTGCATCTATCACAAAAGCTGCATAGACTCATGGTTTGAAGTGAACAG
ATCTTGTCCAGAGCACCCTGCTGACTGA

Translation (195 aa):
MGGKQSTAARSRGPFPGVSTDDSAVPPPGGAPHFGHYRTGGGAMGLRSRSVSSVAGMGMDPSTAGGVPFS
LYTPASRGTGDSERAPGGGGSTSDSTYAHGNGYQETGGGHHRDGMLYLGSRASLADALPLHIAPRWFSSH
SDDVLTKDAGECVICLEELLQGDTIARLPCLCIYHKSCIDSWFEVNRSCPEHPAD


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH