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Report for CCDS52842.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
52842.1 Public Mus musculus 9 Tpm1 23 108 98 CCDS HistoryNCBI Gene:22003Re-query CCDS DB by CCDS ID:52842.1Re-query CCDS DB by GeneID:22003See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 52842.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000113690.7 ENSMUSP00000109320.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000113690.7Link to Ensembl Protein Viewer:ENSMUSP00000109320.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000113690Re-query CCDS DB by Protein ID:ENSMUSP00000109320
Original member Current member NCBI NM_001164256.1 NP_001157728.1 Accepted alive Link to Nucleotide Sequence:NM_001164256.1Link to Protein Sequence:NP_001157728.1Re-query CCDS DB by Nucleotide ID:NM_001164256Re-query CCDS DB by Protein ID:NP_001157728Link to BLAST:NP_001157728.1

Chromosomal Locations for CCDS 52842.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 9 (NC_000075.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 67024492 67024565 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 67031029 67031098 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 67031452 67031514 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 67031951 67032026 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 67032794 67032864 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 67033876 67033993 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 67035995 67036128 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 67043578 67043709 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (738 nt):
ATGGCGGGTAGCAGCTCGCTGGAGGCGGTGCGGAGAAAGATCCGGAGCCTGCAGGAGCAGGCGGATGCCG
CGGAGGAGCGTGCGGGCAGCCTGCAGCGCGAGCTGGACCAGGAGCGGAAGCTGCGGGAAACCGCTGAAGC
TGACGTAGCTTCTCTGAACAGACGCATCCAGCTGGTTGAGGAGGAGTTGGATCGTGCTCAGGAGCGTCTG
GCCACAGCTCTGCAGAAGCTGGAGGAGGCCGAGAAGGCTGCAGATGAGAGTGAGAGAGGCATGAAAGTCA
TTGAAAGCCGAGCCCAAAAAGATGAAGAAAAGATGGAGATTCAGGAGATCCAGCTGAAAGAGGCCAAGCA
CATTGCTGAAGATGCTGACCGGAAGTATGAAGAGGTGGCCCGTAAGCTGGTCATCATCGAGAGCGACCTG
GAACGTGCAGAGGAGCGGGCTGAGCTCTCAGAAGGCAAATGTGCCGAGCTTGAAGAAGAATTGAAAACGG
TGACGAACAACTTGAAGTCACTGGAGGCTCAGGCTGAGAAGTACTCTCAGAAGGAAGACAAATATGAAGA
GGAGATCAAGGTTCTCTCTGACAAGCTGAAGGAGGCTGAAACTCGGGCTGAGTTTGCAGAGAGATCAGTA
ACCAAATTGGAGAAAAGCATTGATGACTTAGAAGATCAACTCTACCATCAACTCGAGCAAAACCGCCGCC
TAACTAACGAGCTAAAGCTGGCCCTGAATGAGGATTAA

Translation (245 aa):
MAGSSSLEAVRRKIRSLQEQADAAEERAGSLQRELDQERKLRETAEADVASLNRRIQLVEEELDRAQERL
ATALQKLEEAEKAADESERGMKVIESRAQKDEEKMEIQEIQLKEAKHIAEDADRKYEEVARKLVIIESDL
ERAEERAELSEGKCAELEEELKTVTNNLKSLEAQAEKYSQKEDKYEEEIKVLSDKLKEAETRAEFAERSV
TKLEKSIDDLEDQLYHQLEQNRRLTNELKLALNED


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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