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Report for CCDS53017.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
53017.1 Public Mus musculus X Syn1 23 108 98 CCDS HistoryNCBI Gene:20964Re-query CCDS DB by CCDS ID:53017.1Re-query CCDS DB by GeneID:20964See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 53017.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000081893.6 ENSMUSP00000080568.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000081893.6Link to Ensembl Protein Viewer:ENSMUSP00000080568.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000081893Re-query CCDS DB by Protein ID:ENSMUSP00000080568
Original member Current member NCBI NM_013680.4 NP_038708.3 Accepted alive Link to Nucleotide Sequence:NM_013680.4Link to Protein Sequence:NP_038708.3Re-query CCDS DB by Nucleotide ID:NM_013680Re-query CCDS DB by Protein ID:NP_038708Link to BLAST:NP_038708.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_038708.3 706 O88935-2 706 100% 0 0

Chromosomal Locations for CCDS 53017.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome X (NC_000086.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 20861474 20861609 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 20862499 20863090 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 20863183 20863270 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 20863584 20863730 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 20864761 20864863 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 20864955 20865029 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 20865119 20865261 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 20865846 20865908 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 20907077 20907166 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 20907951 20908107 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 20909337 20909428 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 20909525 20909582 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 20920413 20920789 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2121 nt):
ATGAACTACCTGCGGCGCCGCCTGTCGGACAGCAACTTCATGGCCAATCTGCCGAATGGGTACATGACAG
AC
CTGCAGCGCCCGCAACCGCCCCCGCCGCCTCCCTCGGCCGCCAGCCCTGGGGCCACGCCCGGCTCCGC
G
ACAGCCTCTGCCGAGAGGGCCTCCACAGCTGCTCCAGTGGCTTCTCCAGCAGCCCCTAGTCCTGGGTCC
TCG
GGGGGCGGCGGCTTCTTCTCGTCGCTGTCTAACGCGGTCAAGCAAACCACAGCAGCCGCAGCCGCCA
CC
TTCAGCGAGCAGGTGGGCGGTGGCTCTGGGGGCGCAGGCCGCGGGGGCGCCGCCGCCAGGGTGCTGCT
G
GTCATCGACGAACCGCACACCGACTGGGCAAAATACTTCAAAGGGAAGAAGATCCATGGAGAAATTGAC
ATT
AAAGTAGAGCAAGCTGAATTCTCTGATCTCAATCTTGTGGCTCATGCCAATGGTGGATTCTCTGTGG
AC
ATGGAAGTTCTTCGGAATGGAGTCAAAGTTGTGAGGTCTCTGAAGCCAGACTTTGTGCTGATCCGCCA
G
CATGCCTTCAGCATGGCACGTAATGGAGACTACCGAAGTTTGGTCATTGGGCTGCAGTATGCTGGAATC
CCC
AGTGTAAACTCTTTGCATTCTGTCTACAACTTCTGTGACAAACCCTGGGTGTTTGCCCAGATGGTTC
GA
CTACACAAGAAGCTTGGAACAGAGGAATTCCCTCTGATTGATCAGACTTTCTATCCTAATCACAAAGA
G
ATGCTCAGCAGCACAACATACCCTGTGGTTGTGAAGATGGGCCACGCACATTCTGGGATGGGCAAGGTC
AAG
GTAGACAACCAACATGACTTCCAGGATATTGCAAGTGTTGTGGCACTGACTAAGACATATGCCACTG
CT
GAGCCCTTCATTGATGCTAAATATGATGTGCGTGTCCAGAAGATTGGGCAGAACTACAAGGCCTACAT
G
AGGACATCAGTGTCGGGTAACTGGAAGACCAATACAGGTTCTGCTATGCTTGAGCAGATTGCCATGTCT
GAC
AGGTACAAGTTGTGGGTAGACACGTGCTCAGAGATTTTTGGGGGACTTGACATCTGCGCAGTGGAAG
CG
CTGCATGGCAAGGACGGAAGGGATCACATTATTGAGGTGGTGGGCTCCTCCATGCCACTCATTGGTGA
T
CACCAGGATGAAGACAAGCAGCTCATCGTGGAACTTGTGGTCAACAAGATGACTCAGGCTCTGCCTCGG
CAG
CCGCAGCGGGATGCTTCCCCTGGCAGGGGCTCCCACAGCCAGTCTTCATCCCCAGGAGCCCTGACCT
TG
GGCCGCCAGACCTCCCAGCAGCCTGCAGGTCCTCCTGCTCAACAACGACCCCCACCCCAGGGAGGCCC
T
CCACAGCCAGGCCCAGGACCTCAGCGCCAGGGACCCCCGCTGCAGCAGCGCCCACCCCCACAAGGCCAG
CAA
CATCTTTCTGGCCTTGGACCGCCAGCTGGCAGCCCTCTGCCTCAGCGCCTACCAAGTCCCACCGCAG
CA
CCTCAGCAGTCTGCCTCTCAGGCCACACCAGTGACCCAGGGTCAAGGCCGCCAGTCGCGGCCAGTGGC
A
GGAGGCCCTGGAGCACCTCCAGCAGCGCGCCCACCAGCCTCCCCATCTCCACAGCGTCAGGCGGGGGCC
CCG
CAGGCTACCCGTCAGGCATCTATCTCTGGTCCAGCTCCAACGAAGGCCTCAGGAGCCCCACCCGGAG
GG
CAGCAGCGCCAGGGCCCTCCCCAAAAACCCCCAGGCCCTGCTGGTCCCACTCGTCAGGCCAGTCAGGC
A
GGTCCCGGACCTCGCACTGGGCCTCCCACCACACAGCAGCCCCGGCCCAGCGGCCCAGGTCCTGCTGGA
CGT
CCCGCCAAACCACAGCTGGCCCAGAAACCCAGCCAGGATGTGCCACCACCCATCACCGCCGCTGCCG
GG
GGACCCCCGCACCCCCAGCTCAACAAATCCCAGTCTCTGACCAATGCCTTCAACCTTCCAGAGCCAGC
C
CCTCCCAGGCCCAGCCTTAGCCAGGACGAGGTGAAAGCTGAGACCATCCGCAGCCTGAGGAAGTCTTTC
GCC
AGCCTCTTCTCCGACTGA


Translation (706 aa):
MNYLRRRLSDSNFMANLPNGYMTDLQRPQPPPPPPSAASPGATPGSATASAERASTAAPVASPAAPSPGS
S
GGGGFFSSLSNAVKQTTAAAAATFSEQVGGGSGGAGRGGAAARVLLVIDEPHTD
WAKYFKGKKIHGEID
I
KVEQ
AEFSDLNLVAHANGGFSVDMEVLRNGVKVVRSLKPDFVLIRQHAFSMARNGDYRSLVIGLQYAGI
P
SVNSLHSVYNFCDKPWV
FAQMVRLHKKLGTEEFPLIDQTFYPNHKEMLSSTTYPVVVKMGHAHSGMGKV
K
VDNQHDFQDIASVVALTKTYATAEPFIDAKYDVRVQKIGQNYKAY
MRTSVSGNWKTNTGSAMLEQIAMS
D
RYKLWVDTCSEIFGGLDICAVEALHGKDGRDHIIEVVGSSMPLIGDHQDEDKQLIVELVVNKMTQALPR
Q
PQRDASPGRGSHSQ
SSSPGALTLGRQTSQQPAGPPAQQRPPPQGGPPQPGPGPQRQGPPLQQRPPPQGQ
Q
HLSGLGPPAGSPLPQRLPSPTAAPQQSASQATPVTQGQGRQSRPVAGGPGAPPAARPPASPSPQRQAGA
P
QATRQASISGPAPTKASGAPPGGQQRQGPPQKPPGPAGPTRQASQAGPGPRTGPPTTQQPRPSGPGPAG
R
PAKPQLAQKPSQDVPPPITAAAGGPPHPQL
NKSQSLTNAFNLPEPAPPRPSLSQDEVKAETIRSLRKSF
A
SLFSD




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 Genome Browser Links:   Ensembl Genome Browser
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