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Report for CCDS53719.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
53719.1 Public Homo sapiens 11 NHERF4 24 110 108 CCDS HistoryNCBI Gene:79849Re-query CCDS DB by CCDS ID:53719.1Re-query CCDS DB by GeneID:79849See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 8, NCBI annotation release 37.2, Ensembl annotation release 62

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 53719.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000355547.10 ENSP00000347742.5 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000355547.10Link to Ensembl Protein Viewer:ENSP00000347742.5Re-query CCDS DB by Nucleotide ID:ENST00000355547Re-query CCDS DB by Protein ID:ENSP00000347742
Original member Current member NCBI NM_001168468.2 NP_001161940.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001168468.2Link to Protein Sequence:NP_001161940.1Re-query CCDS DB by Nucleotide ID:NM_001168468Re-query CCDS DB by Protein ID:NP_001161940Link to BLAST:NP_001161940.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001161940.1 505 Q86UT5-2 505 100% 0 0

Chromosomal Locations for CCDS 53719.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 11 (NC_000011.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 119185495 119185510 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 119185925 119185952 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 119186092 119186165 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 119186479 119186690 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 119187270 119187459 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 119187564 119187700 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 119187940 119188144 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 119188355 119188551 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 119188640 119188867 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 119189005 119189205 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 119189463 119189492 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1518 nt):
ATGGAGAAAGCCGCAGATCTGCAGGACACAGCCTCGTTAACTCTGAAGTTTAAGTTTAACCCAAAGCTGG
GCATTGATAATCCTGTCCTCTCCCTGGCCGAAGACCACGACCCCTATGATCCCTGGAGCCTGGAGCGGCC
TCGCTTCTGTTTACTGAGCAAAGAGGAGGGCAAGAGTTTTGGCTTCCACCTGCAGCAGGAGCTGGGCAGG
GCTGGGCATGTGGTGTGCAGGGTGGACCCAGGCACCTCTGCCCAGCGCCAGGGTCTTCAGGAAGGAGACA
GGATCCTGGCGGTGAACAATGATGTTGTGGAACACGAAGACTATGCGGTGGTGGTACGCCGCATCCGGGC
CAGCAGCCCTCGGGTGTTGCTGACAGTATTGGCACGGCATGCACATGACGTGGCCCGAGCTCAGCTGGGA
GAAGATGCCCACCTCTGTCCCACCCTAGGCCCAGGGGTCCGGCCCCGGCTGTGCCACATAGTGAAAGATG
AGGGTGGTTTTGGCTTCAGTGTCACCCATGGCAATCAGGGTCCTTTCTGGTTGGTGCTAAGTACTGGAGG
AGCAGCTGAGCGGGCAGGGGTGCCCCCCGGGGCCCGGCTGCTGGAAGTGAATGGGGTCAGTGTGGAGAAG
TTCACTCACAACCAACTCACCAGGAAGCTTTGGCAGAGTGGACAGCAGGTGACCTTGCTGGTGGCAGGGC
CAGAGGTGGAAGAACAGTGTCGCCAGCTGGGATTGCCCCTGGCTGCACCCCTGGCAGAGGGCTGGGCACT
GCCCACCAAGCCCCGCTGCCTGCACCTGGAGAAAGGGCCCCAGGGTTTTGGGTTCCTGCTCCGGGAGGAA
AAGGGCCTTGACGGTCGCCCTGGACAGTTCCTGTGGGAGGTGGACCCGGGACTGCCAGCCAAGAAGGCTG
GGATGCAGGCTGGGGACCGGCTGGTGGCTGTGGCTGGGGAGAGCGTGGAGGGGCTGGGCCATGAGGAGAC
AGTGTCCAGGATCCAGGGGCAGGGCTCCTGTGTCTCCCTCACTGTCGTCGACCCTGAGGCGGACCGCTTC
TTCAGCATGGTTCGCCTGTCCCCACTCCTCTTCTTGGAGAACACAGAGGCTCCCGCCTCGCCCCGGGGCA
GCAGCTCAGCCTCACTGGTTGAGACAGAGGACCCTTCACTTGAAGACACAAGCGTGCCTTCTGTCCCTCT
TGGCTCCCGACAGTGCTTCCTGTACCCTGGGCCTGGTGGCAGCTATGGCTTCCGACTCAGTTGTGTGGCC
AGTGGGCCTCGTCTCTTCATCTCCCAGGTGACTCCAGGAGGCTCAGCTGCCCGGGCTGGGCTGCAAGTGG
GAGACGTGATTCTGGAAGTGAACGGGTATCCTGTTGGGGGACAGAATGACCTGGAGAGGCTTCAGCAGCT
GCCTGAGGCTGAGCCACCCCTCTGCCTGAAGCTGGCAGCCAGGTCTCTGCGGGGCTTGGAAGCCTGGATT
CCCCCTGGGGCTGCAGAGGACTGGGCTCTGGCCTCGGATCTACTGTAG

Translation (505 aa):
MEKAADLQDTASLTLKFKFNPKLGIDNPVLSLAEDHDPYDPWSLERPRFCLLSKEEGKSFGFHLQQELGR
AGHVVCRVDPGTSAQRQGLQEGDRILAVNNDVVEHEDYAVVVRRIRASSPRVLLTVLARHAHDVARAQLG
EDAHLCPTLGPGVRPRLCHIVKDEGGFGFSVTHGNQGPFWLVLSTGGAAERAGVPPGARLLEVNGVSVEK
FTHNQLTRKLWQSGQQVTLLVAGPEVEEQCRQLGLPLAAPLAEGWALPTKPRCLHLEKGPQGFGFLLREE
KGLDGRPGQFLWEVDPGLPAKKAGMQAGDRLVAVAGESVEGLGHEETVSRIQGQGSCVSLTVVDPEADRF
FSMVRLSPLLFLENTEAPASPRGSSSASLVETEDPSLEDTSVPSVPLGSRQCFLYPGPGGSYGFRLSCVA
SGPRLFISQVTPGGSAARAGLQVGDVILEVNGYPVGGQNDLERLQQLPEAEPPLCLKLAARSLRGLEAWI
PPGAAEDWALASDLL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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