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Report for CCDS53834.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
53834.1 Public Homo sapiens 12 PLBD2 22 109 92 CCDS HistoryNCBI Gene:196463Re-query CCDS DB by CCDS ID:53834.1Re-query CCDS DB by GeneID:196463See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 8, NCBI annotation release 37.2, Ensembl annotation release 62

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 53834.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000545182.6 ENSP00000443463.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000545182.6Link to Ensembl Protein Viewer:ENSP00000443463.2Re-query CCDS DB by Nucleotide ID:ENST00000545182Re-query CCDS DB by Protein ID:ENSP00000443463
Original member NCBI NM_001159727.1 NP_001153199.1 Updated not alive Link to Nucleotide Sequence:NM_001159727.1Link to Protein Sequence:NP_001153199.1Re-query CCDS DB by Nucleotide ID:NM_001159727Re-query CCDS DB by Protein ID:NP_001153199
Current member NCBI NM_001159727.2 NP_001153199.1 Accepted alive Link to Nucleotide Sequence:NM_001159727.2Link to Protein Sequence:NP_001153199.1Re-query CCDS DB by Nucleotide ID:NM_001159727Re-query CCDS DB by Protein ID:NP_001153199Link to BLAST:NP_001153199.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001153199.1 557 Q8NHP8-2 557 100% 0 0

Chromosomal Locations for CCDS 53834.1

Assembly GRCh38.p12 (GCF_000001405.38)

On '+' strand of Chromosome 12 (NC_000012.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 113358601 113358890 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 113369116 113369209 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 113372649 113372807 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 113374474 113374574 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 113374793 113375007 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 113380745 113380842 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 113384105 113384265 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 113385212 113385283 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 113386937 113387089 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 113387744 113387906 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 113388459 113388626 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1674 nt):
ATGGTGGGCCAGATGTACTGCTACCCCGGCAGCCACCTGGCCCGGGCGCTGACGCGGGCGCTGGCGCTGG
CC
CTGGTGCTGGCCCTGCTGGTCGGGCCGTTCCTGAGCGGCCTGGCGGGGGCGATCCCAGCGCCGGGGGG
C
CGCTGGGCGCGCGATGGGCAGGTCCCTCCAGCCTCCCGCAGCCGCTCGGTGCTCCTGGACGTCTCGGCG
GGC
CAGCTGCTTATGGTGGACGGACGCCACCCTGACGCCGTGGCCTGGGCCAACCTCACCAACGCCATCC
GC
GAGACTGGGTGGGCCTTCCTGGAGCTGGGCACAAGTGGCCAATACAATGACAGCTTGCAGGCCTATGC
A
GCCGGTGTGGTGGAGGCTGCTGTGTCGGAGGAGCTCATCTACATGCACTGGATGAACACGGTGGTGAAT
TAC
TGCGGCCCCTTCGAGTATGAAGTCGGCTACTGCGAGAGGCTGAAGAGCTTCCTGGAGGCCAACCTAG
AG
TGGATGCAGGAAGAGATGGAGTCAAACCCAGACTCACCTTACTGGCACCAGGTGCGGCTGACCCTCCT
G
CAGCTGAAAGGCCTGGAGGACAGCTACGAAGGCCGTGTGAGCTTCCCAGCTGGGAAGTTCACCATCAAA
CCC
TTGGGGTTCCTCCTGCTGCAGCTCTCTGGGGACCTGGAAGACCTGGAGCTGGCCCTGAACAAGACCA
AG
ATCAAACCTTCTCTGGGCTCTGGCTCCTGTTCTGCCCTCATCAAGCTGCTCCCTGGCCAGAGTGACCT
C
CTGGTTGCCCACAACACCTGGAACAACTACCAGCACATGCTGCGTGTCATCAAGAAGTACTGGCTCCAG
TTC
CGGGAAGGCCCCTGGGGGGACTACCCGCTGGTTCCCGGCAACAAGCTGGTCTTCTCCTCCTACCCCG
GC
ACCATCTTCTCCTGCGACGACTTCTACATCCTGGGCAGTGGGCTGGTGACACTGGAGACCACCATTGG
C
AACAAGAACCCAGCCCTGTGGAAGTATGTGCGGCCCAGGGGCTGTGTGCTGGAGTGGGTACGCAACATC
GTG
GCCAACCGCCTGGCCTCGGATGGGGCCACCTGGGCAGACATCTTCAAGAGGTTCAACAGCGGCACCG
GC
ATGGTGGTGGTGGCTGACAAGACCTCGGAGCTCTACCAGAAGACCTACTGGGCCAGCTACAACATACC
G
TCCTTCGAGACTGTGTTCAATGCCAGTGGGCTGCAGGCCCTAGTGGCCCAGTATGGGGACTGGTTTTCT
TAT
GACGGGAGCCCCCGGGCCCAGATCTTCCGGCGGAACCAGTCACTGGTACAAGACATGGACTCCATGG
TC
AGGCTGATGAGGTACAATGACTTCCTCCATGACCCTCTGTCACTGTGCAAAGCCTGCAACCCCCAGCC
C
AATGGGGAGAATGCTATCTCCGCCCGCTCCGACCTCAACCCGGCCAATGGCTCCTACCCCTTCCAGGCC
CTG
CGTCAGCGCTCCCATGGGGGTATCGATGTGAAGGTGACCAGCATGTCACTGGCCAGGATCCTGAGCC
TG
CTGGCGGCCAGCGGTCCCACGTGGGACCAGGTGCCCCCGTTCCAGTGGAGCACCTCGCCCTTCAGCGG
C
CTGCTGCACATGGGCCAGCCAGACCTCTGGAAGTTCGCGCCTGTCAAGGTTTCATGGGACTGA


Translation (557 aa):
MVGQMYCYPGSHLARALTRALALALVLALLVGPFLSGLAGAIPAPGGRWARDGQVPPASRSRSVLLDVSA
G
QLLMVDGRHPDAVAWANLTNAIRET
GWAFLELGTSGQYNDSLQAYAAGVVEAAVSEELIYMHWMNTVVN
Y
CGPFEYEVGYCERLKSFLEANLEWMQEEMESNPDSPYWHQ
VRLTLLQLKGLEDSYEGRVSFPAGKFTIK
P
LGF
LLLQLSGDLEDLELALNKTKIKPSLGSGSCSALIKLLPGQSDLLVAHNTWNNYQHMLRVIKKYWLQ
F
REGPW
GDYPLVPGNKLVFSSYPGTIFSCDDFYILGSGLVTLETTIGNKNPALWKYVRPRGCVLEWVRNI
V
ANRLASDGATWADIFKRFNSG
TGMVVVADKTSELYQKTYWASYNIPSFETVFNASGLQALVAQYGDWFS
Y
DGSPRAQIFRRNQSLVQDMDSMVRLM
RYNDFLHDPLSLCKACNPQPNGENAISARSDLNPANGSYPFQA
L
RQRSHGGIDVK
VTSMSLARILSLLAASGPTWDQVPPFQWSTSPFSGLLHMGQPDLWKFAPVKVSWD



Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser