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Report for CCDS55328.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
55328.1 Public Homo sapiens 9 AOPEP 24 110 108 CCDS HistoryNCBI Gene:84909Re-query CCDS DB by CCDS ID:55328.1Re-query CCDS DB by GeneID:84909See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 8, NCBI annotation release 37.2, Ensembl annotation release 62

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 55328.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000375315.8 ENSP00000364464.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000375315.8Link to Ensembl Protein Viewer:ENSP00000364464.2Re-query CCDS DB by Nucleotide ID:ENST00000375315Re-query CCDS DB by Protein ID:ENSP00000364464
Original member Current member NCBI NM_001193329.3 NP_001180258.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001193329.3Link to Protein Sequence:NP_001180258.1Re-query CCDS DB by Nucleotide ID:NM_001193329Re-query CCDS DB by Protein ID:NP_001180258Link to BLAST:NP_001180258.1
Original member Current member NCBI NM_001386075.1 NP_001373004.1 Accepted alive Link to Nucleotide Sequence:NM_001386075.1Link to Protein Sequence:NP_001373004.1Re-query CCDS DB by Nucleotide ID:NM_001386075Re-query CCDS DB by Protein ID:NP_001373004Link to BLAST:NP_001373004.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001180258.1 819 Q8N6M6-1 819 100% 0 0
NP_001373004.1 819 Q8N6M6-1 819 100% 0 0

Chromosomal Locations for CCDS 55328.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 9 (NC_000009.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 94759784 94760580 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 94773002 94773168 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 94792765 94792918 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 94800757 94801002 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 94923986 94924175 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 94928425 94928531 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 94955177 94955279 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 94955908 94956015 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 94967758 94967801 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 94979367 94979427 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 95005158 95005220 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 95005542 95005616 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 95060694 95060810 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 95080694 95080780 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 95082575 95082715 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2460 nt):
ATGGACATACAGCTGGACCCTGCCAGAGATGACCTGCCTCTCATGGCCAACACCAGCCACATACTTGTGA
AGCACTATGTACTGGATTTGGATGTGGATTTTGAAAGTCAAGTCATTGAGGGGACCATAGTGCTTTTCCT
CGAGGATGGAAACAGATTCAAGAAACAGAATAGCTCTATTGAGGAAGCCTGCCAATCAGAATCAAACAAA
GCCTGCAAATTTGGGATGCCTGAACCCTGCCATATTCCCGTGACAAATGCAAGGACCTTCTCATCTGAAA
TGGAATATAATGATTTTGCAATCTGTAGTAAAGGTGAAAAAGATACTTCTGATAAAGATGGTAACCATGA
CAACCAGGAACATGCTTCTGGGATTTCTAGCTCAAAGTACTGCTGTGACACAGGGAATCATGGGAGTGAG
GATTTTTTGCTAGTGTTGGACTGCTGTGATTTATCTGTGTTAAAAGTCGAGGAGGTGGATGTTGCTGCTG
TGCCAGGTCTGGAAAAATTTACAAGGTCTCCTGAGCTCACGGTTGTTTCTGAGGAGTTCAGGAATCAGAT
TGTACGTGAACTTGTGACTTTGCCTGCAAATCGTTGGAGGGAGCAGTTAGACTATTACGCTCGCTGCAGC
CAGGCTCCTGGCTGTGGGGAACTCCTCTTTGACACTGACACTTGGAGCTTGCAGATAAGGAAGACAGGGG
CTCAGACAGCTACTGACTTTCCTCATGCTATCAGGATATGGTACAAAACTAAACCTGAAGGGCGATCGGT
TACATGGACCTCAGACCAGAGTGGCAGGCCATGTGTTTATACTGTGGGATCTCCCATAAACAACAGGGCC
CTTTTTCCATGCCAGGAGCCACCCGTTGCCATGTCAACATGGCAGGCTACAGTTCGAGCAGCTGCATCTT
TTGTTGTTTTAATGAGTGGGGAAAATTCTGCCAAACCAACGCAGCTTTGGGAAGAGTGCTCAAGCTGGTA
TTACTATGTAACTATGCCAATGCCAGCCTCCACCTTCACAATTGCAGTGGGATGCTGGACAGAAATGAAG
ATGGAGACATGGTCATCAAATGATTTGGCAACAGAGAGACCCTTCTCACCTTCTGAGGCCAACTTCAGGC
ATGTTGGTGTTTGCAGTCACATGGAATACCCCTGCCGCTTCCAGAATGCTTCTGCCACCACCCAGGAGAT
CATTCCTCATCGGGTCTTTGCCCCTGTGTGCCTCACGGGTGCCTGCCAAGAGACCCTTCTGCGGCTGATC
CCTCCTTGCCTCTCAGCAGCACATTCTGTTCTGGGAGCACACCCGTTCTCTCGGCTGGATGTTCTCATCG
TCCCTGCCAACTTTCCAAGTCTGGGGATGGCCAGCCCACACATCATGTTCCTCTCTCAGAGCATCTTGAC
AGGAGGGAACCATCTCTGTGGGACCCGCCTCTGCCATGAAATTGCCCATGCCTGGTTTGGCCTAGCCATC
GGGGCCCGAGACTGGACGGAGGAGTGGCTGAGTGAAGGCTTCGCCACTCACTTGGAGGATGTGTTTTGGG
CCACAGCACAGCAGCTGGCCCCCTATGAGGCCCGGGAGCAGCAGGAGCTGAGGGCTTGTCTGCGCTGGCG
TCGCCTCCAGGACGAGATGCAATGCTCCCCCGAGGAGATGCAGGTGTTAAGACCCAGTAAAGACAAAACT
GGCCACACAAGTGACTCGGGAGCATCTGTTATCAAGCATGGACTTAATCCGGAGAAGATCTTCATGCAGG
TGCATTATTTAAAGGGCTACTTCCTTCTTCGGTTTCTTGCCAAAAGACTTGGAGATGAAACCTATTTTTC
ATTTTTAAGAAAATTTGTGCACACATTTCATGGACAGCTGATTCTTTCCCAGGATTTCCTTCAAATGCTA
CTGGAGAACATTCCAGAAGAAAAAAGGCTTGAGCTGTCTGTTGAAAACATCTACCAAGACTGGCTTGAGA
GTTCCGGAATACCAAAGCCGCTGCAGAGGGAGCGTCGCGCCGGGGCGGAGTGCGGGCTTGCGCGGCAAGT
GCGCGCCGAGGTCACGAAATGGATTGGAGTGAACCGGAGACCCCGAAAACGGAAGCGCAGGGAGAAGGAA
GAGGTGTTTGAAAAGCTTCTTCCAGACCAGCTGGTCTTGCTTCTGGAGCATCTCTTGGAGCAGAAGACTC
TGAGCCCCCGAACTCTGCAAAGCCTCCAGAGGACATACCACCTCCAGGATCAGGATGCAGAGGTTCGCCA
TCGGTGGTGTGAACTCATTGTTAAGCACAAGTTCACGAAAGCCTACAAAAGTGTGGAGAGGTTCCTTCAG
GAGGATCAGGCCATGGGTGTGTACCTCTACGGGGAGCTGATGGTGAGTGAGGACGCCAGACAGCAGCAGC
TCGCCCGTAGGTGCTTCGAGCGGACCAAGGAGCAGATGGATAGGTCCTCAGCCCAGGTGGTGGCCGAAAT
GTTATTTTAA

Translation (819 aa):
MDIQLDPARDDLPLMANTSHILVKHYVLDLDVDFESQVIEGTIVLFLEDGNRFKKQNSSIEEACQSESNK
ACKFGMPEPCHIPVTNARTFSSEMEYNDFAICSKGEKDTSDKDGNHDNQEHASGISSSKYCCDTGNHGSE
DFLLVLDCCDLSVLKVEEVDVAAVPGLEKFTRSPELTVVSEEFRNQIVRELVTLPANRWREQLDYYARCS
QAPGCGELLFDTDTWSLQIRKTGAQTATDFPHAIRIWYKTKPEGRSVTWTSDQSGRPCVYTVGSPINNRA
LFPCQEPPVAMSTWQATVRAAASFVVLMSGENSAKPTQLWEECSSWYYYVTMPMPASTFTIAVGCWTEMK
METWSSNDLATERPFSPSEANFRHVGVCSHMEYPCRFQNASATTQEIIPHRVFAPVCLTGACQETLLRLI
PPCLSAAHSVLGAHPFSRLDVLIVPANFPSLGMASPHIMFLSQSILTGGNHLCGTRLCHEIAHAWFGLAI
GARDWTEEWLSEGFATHLEDVFWATAQQLAPYEAREQQELRACLRWRRLQDEMQCSPEEMQVLRPSKDKT
GHTSDSGASVIKHGLNPEKIFMQVHYLKGYFLLRFLAKRLGDETYFSFLRKFVHTFHGQLILSQDFLQML
LENIPEEKRLELSVENIYQDWLESSGIPKPLQRERRAGAECGLARQVRAEVTKWIGVNRRPRKRKRREKE
EVFEKLLPDQLVLLLEHLLEQKTLSPRTLQSLQRTYHLQDQDAEVRHRWCELIVKHKFTKAYKSVERFLQ
EDQAMGVYLYGELMVSEDARQQQLARRCFERTKEQMDRSSAQVVAEMLF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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