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Report for CCDS55330.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
55330.1 Public Homo sapiens 9 TEX10 24 110 108 CCDS HistoryNCBI Gene:54881Re-query CCDS DB by CCDS ID:55330.1Re-query CCDS DB by GeneID:54881See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 8, NCBI annotation release 37.2, Ensembl annotation release 62

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 55330.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000535814.5 ENSP00000444555.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000535814.5Link to Ensembl Protein Viewer:ENSP00000444555.1Re-query CCDS DB by Nucleotide ID:ENST00000535814Re-query CCDS DB by Protein ID:ENSP00000444555
Original member Current member NCBI NM_001161584.2 NP_001155056.1 Accepted alive Link to Nucleotide Sequence:NM_001161584.2Link to Protein Sequence:NP_001155056.1Re-query CCDS DB by Nucleotide ID:NM_001161584Re-query CCDS DB by Protein ID:NP_001155056Link to BLAST:NP_001155056.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001155056.1 913 Q9NXF1-2 913 100% 0 0

Chromosomal Locations for CCDS 55330.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 9 (NC_000009.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 100302191 100302304 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 100303632 100303785 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 100308500 100308681 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 100310299 100310379 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 100320265 100320398 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 100321683 100321771 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 100326302 100326479 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 100327787 100327962 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 100329140 100329275 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 100329931 100330169 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 100340257 100340369 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 100346072 100346315 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 100346694 100347406 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 100349184 100349369 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 100352419 100352421 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2742 nt):
ATGTCGAGAATGACTAAAAAAAGAAAACGCCAACATGATTTTCAAAAAGTAAAATTGAAAGTTGGTAAAA
AGAAGCCCAAGTTACAAAATGCTACTCCTACAAACTTTAAAACAAAGACTATACATCTGCCTGAGCAACT
CAAAGAGGATGGAACACTTCCAACAAACAATAGAAAACTTAACATAAAGGATTTGCTGTCACAGATGCAT
CACTACAATGCTGGGGTTAAACAAAGTGCTCTTCTTGGACTTAAAGACCTTTTGTCTCAATACCCATTTA
TAATTGATGCACACCTTTCAAACATATTAAGTGAAGTGACTGCTGTGTTTACAGATAAAGATGCTAATGT
ACGATTAGCAGCAGTTCAACTTCTTCAATTCCTGGCCCCCAAAATACGAGCTGAACAAATTTCTCCATTT
TTTCCTTTGGTAAGTGCCCATCTCTCTAGTGCCATGACTCACATTACTGAAGGAATTCAGGAGGACTCTT
TAAAAGTTTTGGACATTCTGCTGGAACAGTACCCAGCTCTAATTACTGGCCGTAGCAGCATATTGCTTAA
GAATTTTGTAGAACTTATTTCTCATCAGCAGCTGTCCAAAGGACTGATAAATAGAGACAGATCCCAGTCC
TGGATACTTTCTGTAAATCCTAATCGGAGACTCACTTCTCAGCAATGGAGGCTGAAAGTCTTAGTGAGAC
TCAGTAAATTCCTTCAGGCCTTGGCAGATGGATCCAGTAGGTTGAGAGAAAGTGAAGGACTTCAGGAACA
GAAAGAAAATCCCCATGCCACTAGCAACTCCATTTTTATCAACTGGAAGGAACATGCCAACGACCAGCAA
CACATCCAGGTTTATGAAAATGGGGGTTCACAGCCAAATGTCAGTTCACAGTTCAGGCTACGGTATCTGG
TTGGAGGACTGAGTGGTGTGGATGAAGGCCTGTCATCTACTGAAAACCTGAAAGGATTTATTGAGATAAT
AATTCCATTGCTAATTGAATGCTGGGTTGAAGCTGTACCTCCACAACTAGCTACTCCTGTTGGGAATGGT
ATAGAACGAGAACCTCTACAGGTTATGCAGCAAGTTCTTAATATTATTTCCCTTCTGTGGAAACTCTCTA
AACAACAGGATGAAACCCATAAATTGGAGTCATGGCTTCGAAAGAACTACCTTATTGATTTTAAACACCA
TTTTATGAGTCGTTTTCCATATGTCTTAAAAGAAATAACCAAGCACAAAAGGAAAGAGCCAAATAAAAGC
ATCAAGCATTGCACAGTTCTCTCCAATAACATAGATCATCTCTTACTGAATTTAACACTGTCTGATATCA
TGGTCTCCCTGGCAAATGCGTCAACTTTGCAGAAGGATTGCAGTTGGATAGAAATGATAAGGAAATTTGT
AACAGAGACCCTTGAAGATGGCTCTAGGCTAAATAGTAAGCAACTGAACAGATTGCTGGGAGTATCCTGG
AGGTTAATGCAAATACAGCCAAACAGAGAGGACACAGAGACTCTTATTAAGGCAGTTTATACATTATATC
AGCAGAGGGGCCTTATCCTTCCAGTTCGGACTTTGTTATTGAAGTTTTTCAGTAAAATCTATCAGACAGA
AGAACTGAGATCTTGTAGATTCAGATATCGTAGTAAAGTGTTATCCCGTTGGCTGGCTGGCTTACCATTG
CAACTTGCTCATCTTGGCTCCCGAAATCCTGAGCTCTCTACACAGCTTATCGATATCATTCATACCGCTG
CAGCACGAGCAAATAAAGAATTACTAAAAAGTTTACAAGCTACTGCCCTCCGAATTTATGATCCACAAGA
AGGTGCTGTGGTGGTTCTCCCTGCAGACTCTCAGCAGCGTTTGGTTCAGCTTGTATATTTCCTACCCAGT
CTGCCGGCTGATTTGCTTTCTCGGTTAAGTCGTTGCTGTATTATGGGAAGACTCAGTTCAAGTTTGGCTG
CCATGCTTATCGGGATACTGCACATGAGATCATCATTTTCTGGGTGGAAGTATTCAGCTAAAGACTGGTT
GATGAGTGATGTAGACTATTTCAGCTTCTTATTTTCCACACTTACAGGGTTTTCGAAAGAGGAGTTGACT
TGGCTTCAGAGCCTTCGAGGAGTTCCTCATGTCATCCAGACACAGCTTTCCCCTGTGCTTCTCTACCTTA
CAGATTTGGATCAATTTTTACACCACTGGGATGTAACAGAGGCAGTTTTTCACAGTTTATTGGTTATTCC
TGCCCGAAGTCAGAACTTTGACATCTTGCAAAGTGCCATCAGTAAGCATTTGGTTGGGTTGACTGTAATT
CCTGACAGCACGGCTGGCTGTGTTTTTGGTGTTATCTGTAAGCTCCTGGATCATACTTGTGTAGTTAGTG
AGACTCTACTGCCATTTCTGGCTTCTTGTTGCTACAGTCTTCTTTATTTTCTGCTCACTATAGAGAAAGG
GGAAGCAGAACATCTAAGAAAGAGGTTGATGCTGCAGAGCCTGCGGGTGAACAGAGTTGGGCCTGAGGAG
CTGCCTGTTGTGGGCCAGCTGCTTCGACTGCTGCTTCAGCATGCACCCCTCAGGACTCATATGTTGACCA
ATGCGATCTTGGTGCAGCAGATCATCAAGAATATCACGACATTGAAGAGTGGAAGTGTTCAGGAACAGTG
GCTCACAGACTTACATTACTGCTTCAACGTGTATATCACTGGGCATCCCCAAGGGCCCAGTGCACTGGCT
ACAGTGTATTGA

Translation (913 aa):
MSRMTKKRKRQHDFQKVKLKVGKKKPKLQNATPTNFKTKTIHLPEQLKEDGTLPTNNRKLNIKDLLSQMH
HYNAGVKQSALLGLKDLLSQYPFIIDAHLSNILSEVTAVFTDKDANVRLAAVQLLQFLAPKIRAEQISPF
FPLVSAHLSSAMTHITEGIQEDSLKVLDILLEQYPALITGRSSILLKNFVELISHQQLSKGLINRDRSQS
WILSVNPNRRLTSQQWRLKVLVRLSKFLQALADGSSRLRESEGLQEQKENPHATSNSIFINWKEHANDQQ
HIQVYENGGSQPNVSSQFRLRYLVGGLSGVDEGLSSTENLKGFIEIIIPLLIECWVEAVPPQLATPVGNG
IEREPLQVMQQVLNIISLLWKLSKQQDETHKLESWLRKNYLIDFKHHFMSRFPYVLKEITKHKRKEPNKS
IKHCTVLSNNIDHLLLNLTLSDIMVSLANASTLQKDCSWIEMIRKFVTETLEDGSRLNSKQLNRLLGVSW
RLMQIQPNREDTETLIKAVYTLYQQRGLILPVRTLLLKFFSKIYQTEELRSCRFRYRSKVLSRWLAGLPL
QLAHLGSRNPELSTQLIDIIHTAAARANKELLKSLQATALRIYDPQEGAVVVLPADSQQRLVQLVYFLPS
LPADLLSRLSRCCIMGRLSSSLAAMLIGILHMRSSFSGWKYSAKDWLMSDVDYFSFLFSTLTGFSKEELT
WLQSLRGVPHVIQTQLSPVLLYLTDLDQFLHHWDVTEAVFHSLLVIPARSQNFDILQSAISKHLVGLTVI
PDSTAGCVFGVICKLLDHTCVVSETLLPFLASCCYSLLYFLLTIEKGEAEHLRKRLMLQSLRVNRVGPEE
LPVVGQLLRLLLQHAPLRTHMLTNAILVQQIIKNITTLKSGSVQEQWLTDLHYCFNVYITGHPQGPSALA
TVY


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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