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Report for CCDS55388.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
55388.1 Public Homo sapiens X CNKSR2 24 110 108 CCDS HistoryNCBI Gene:22866Re-query CCDS DB by CCDS ID:55388.1Re-query CCDS DB by GeneID:22866See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 8, NCBI annotation release 37.2, Ensembl annotation release 62

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 55388.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000425654.7 ENSP00000397906.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000425654.7Link to Ensembl Protein Viewer:ENSP00000397906.2Re-query CCDS DB by Nucleotide ID:ENST00000425654Re-query CCDS DB by Protein ID:ENSP00000397906
Original member Current member NCBI NM_001168647.3 NP_001162118.1 Accepted alive Link to Nucleotide Sequence:NM_001168647.3Link to Protein Sequence:NP_001162118.1Re-query CCDS DB by Nucleotide ID:NM_001168647Re-query CCDS DB by Protein ID:NP_001162118Link to BLAST:NP_001162118.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001162118.1 1004 Q8WXI2-5 1004 100% 0 0

Chromosomal Locations for CCDS 55388.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome X (NC_000023.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 21374898 21374961 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 21426497 21426660 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 21432612 21432814 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 21440694 21440781 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 21470766 21470807 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 21490459 21490578 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 21497787 21497846 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 21501520 21501588 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 21516485 21516631 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 21526867 21527000 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 21531856 21532067 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 21563238 21563452 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 21590572 21590620 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 21591022 21591194 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 21594974 21595047 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 21595324 21595395 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 21601282 21601349 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 21606779 21606879 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 21609071 21609617 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 21648831 21649027 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 21652306 21652521 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3015 nt):
ATGGCTCTGATAATGGAACCGGTGAGCAAATGGTCTCCGAGTCAAGTAGTGGACTGGATGAAAGGTCTTG
AT
GACTGTTTGCAGCAGTATATTAAGAACTTTGAGAGGGAGAAGATCAGTGGGGACCAGCTGCTGCGCAT
T
ACACATCAGGAGCTAGAAGATCTGGGGGTCAGCCGCATTGGCCATCAGGAACTGATCTTGGAAGCAGTT
GAC
CTTCTGTGTGCATTGAATTATGGCTTGGAAACAGAAAATCTAAAAACCCTTTCTCACAAGTTGAATG
CA
TCTGCCAAAAATCTGCAGAATTTTATAACAGGAAGGAGAAGGAGTGGCCATTATGATGGGAGGACCAG
C
CGAAAATTGCCAAACGACTTTCTGACCTCAGTTGTGGATCTGATTGGAGCAGCCAAGAGTCTGCTTGCC
TGG
TTGGACAGGTCACCATTTGCTGCTGTGACAGACTATTCAGTTACAAGAAATAATGTCATACAACTCT
GC
CTGGAGTTAACAACAATTGTGCAACAGGATTGTACTGTATATGAAACAGAGAATAAAATTCTTCACGT
G
TGTAAAACTCTTTCTGGAGTCTGTGACCACATCATATCCCTGTCGTCAGATCCTCTGGTTTCACAGTCT
GCT
CACCTGGAAGTGATTCAACTGGCAAACATTAAACCAAGCGAAGGGCTGGGTATGTATATTAAATCTA
CA
TATGATGGCCTCCATGTAATTACTGGAACCACAGAAAATTCACCTGCAGATCGGTGCAAGAAAATCCA
T
GCTGGCGATGAAGTGATTCAAGTTAATCATCAGACTGTGGTGGGGTGGCAGTTGAAAAATTTGGTGAAT
GCA
CTACGAGAGGACCCGAGTGGTGTTATCTTAACTTTGAAAAAGCGACCTCAGAGCATGCTTACCTCAG
CA
CCAGCTTTACTGAAAAATATGAGATGGAAGCCCCTTGCTCTGCAGCCTCTTATACCTAGAAGTCCCAC
A
AGCAGCGTTGCCACGCCTTCCAGCACCATCAGTACACCCACCAAAAGAGACAGTTCTGCCCTCCAGGAT
CTC
TACATTCCCCCTCCTCCTGCAGAACCATATATTCCCAGGGATGAAAAAGGAAACCTTCCTTGTGAAG
AC
CTCAGAGGACATATGGTGGGCAAGCCAGTGCATAAGGGATCTGAATCACCAAATTCATTTCTGGATCA
G
GAATATCGAAAGAGATTTAATATTGTCGAAGAAGATACTGTCTTATATTGCTATGAATATGAAAAAGGA
AGA
TCAAGTAGTCAAGGAAGACGAGAAAGCACCCCAACTTATGAAAACTCTCTACTTCGGTATATGAGCA
AT
GAAAAGATTGCTCAAGAAGAATACATGTTTCAGAGAAACAGCAAAAAGGACACAGGGAAGAAGTCAAA
A
AAGAAGGGTGATAAGAGTAATAGCCCAACTCACTATTCATTGCTACCTAGTTTACAAATGGATGCACTG
AGA
CAAGACATCATGGGCACTCCTGTGCCAGAGACCACACTATACCATACATTTCAGCAGTCCTCACTGC
AG
CACAAATCAAAGAAGAAAAACAAAGGTCCTATAGCAGGCAAGAGCAAAAGACGAATTTCTTGCAAAGA
T
CTTGGCCGTGGTGACTGTGAGGGCTGGCTTTGGAAAAAGAAAGATGCGAAGAGTTACTTTTCACAGAAA
TGG
AAAAAATATTGGTTTGTCCTAAAGGATGCATCCCTTTATTGGTATATTAATGAGGAGGATGAAAAAG
CA
GAAGGATTCATTAGCCTGCCTGAATTTAAAATTGATAGAGCCAGTGAATGCCGCAAAAAATATGCATT
C
AAAGCCTGTCATCCTAAAATCAAAAGCTTTTATTTTGCTGCTGAACATCTTGATGATATGAACAGGTGG
CTT
AACAGAATTAATATGCTGACTGCAGGATATGCAGAAAGAGAGAGGATTAAGCAGGAACAAGATTACT
GG
AGTGAGAGTGACAAGGAAGAAGCAGATACTCCATCAACACCAAAACAAGATAGCCCTCCACCCCCATA
T
GATACATACCCACGACCTCCCTCGATGAGTTGCGCCAGTCCTTATGTGGAAGCAAAACATAGCCGACTT
TCC
TCCACGGAGACTTCTCAGTCTCAGTCTTCTCATGAGGAGTTTCGCCAGGAAGTAACTGGGAGCAGTG
CA
GTGTCTCCCATTCGCAAGACAGCCAGTCAGCGCCGCTCCTGGCAGGATTTAATTGAGACGCCACTGAC
A
AGTTCAGGCTTACACTATCTTCAGACTCTGCCCCTGGAGGATTCTGTCTTCTCTGACTCCGCGGCCATC
TCC
CCAGAGCACAGGCGGCAGTCTACCCTGCCAACTCAGAAATGCCACCTGCAGGATCACTATGGGCCAT
AC
CCCTTAGCTGAGAGTGAGAGGATGCAAGTGCTAAATGGAAATGGGGGCAAGCCTCGAAGTTTTACTCT
G
CCTCGAGATAGCGGGTTCAACCATTGCTGTCTGAATGCTCCAGTTAGTGCCTGTGACCCACAGGATGAC
GTG
CAACCCCCAGAGGTGGAGGAAGAGGAGGAGGAGGAGGAGGAGGAAGGGGAGGCAGCAGGGGAAAACA
TA
GGAGAAAAAAGTGAAAGCAGAGAAGAAAAGTTAGGAGACTCATTGCAAGATTTATACAGGGCACTGGA
G
CAGGCCAGTCTGTCACCACTAGGAGAACATCGTATTTCAACCAAGATGGAATACAAGCTATCATTTATA
AAA
AGATGTAATGATCCTGTAATGAATGAAAAACTACACCGGCTGAGAATTCTCAAAAGCACTTTAAAGG
CC
AGAGAAGGGGAAGTAGCCATTATCGATAAAGTCCTAGACAATCCAGACTTGACATCTAAAGAATTCCA
A
CAATGGAAGCAGATGTACCTCGACCTTTTCTTGGATATCTGTCAAAATACCACCTCAAATGACCCACTG
AGT
ATTTCTTCTGAAGTAGATGTAATCACTTCCTCTCTAGCACACACTCATTCATACATTGAAACGCATG
TC
TAA


Translation (1004 aa):
MALIMEPVSKWSPSQVVDWMKGLDDCLQQYIKNFEREKISGDQLLRITHQELEDLGVSRIGHQELILEAV
D
LLCAL
NYGLETENLKTLSHKLNASAKNLQNFITGRRRSGHYDGRTSRKLPNDFLTSVVDLIGAAKSLLA
W
LD
RSPFAAVTDYSVTRNNVIQLCLELTTIVQQDCTVYETENKILHVCKTLSGVCDHIISLSSDPLVSQS
A
HLEVIQLANIKPSEGL
GMYIKSTYDGLHVITGTTENSPADRCKKIHAGDEVIQVNHQTVVGWQLKNLVN
A
LREDPSGVILTLKKRPQSMLTSAPALLKNMRWKPLALQ
PLIPRSPTSSVATPSSTISTPTKRDSSALQD
L
YIPPPPAEPYIP
RDEKGNLPCEDLRGHMVGKPVHKGSESPNSFLDQEYRKRFNIVEEDTVLYCYEYEKG
R
SSSQGRRESTPTY
ENSLLRYMSNEKIAQEEYMFQRNSKKDTGKKSKKKGDKSNSPTHYSLLPSLQMDAL
R
QDIMGTPVPETTLYH
TFQQSSLQHKSKKKNKGPIAGKSKRRISCKDLGRGDCEGWLWKKKDAKSYFSQK
W
KKYWFVLKDASLYWYINEE
DEKAEGFISLPEFKIDRASECRKKYAFKACHPKIKSFYFAAEHLDDMNRW
L
NRINMLTAGYAERERIKQEQ
DYWSESDKEEADTPSTPKQDSPPPPYDTYPRPPSMSCASPYVEAKHSRL
S
STETSQSQSSHEEFRQEVTGSSAVSPIRKTASQRRSWQDLIETPLTSSGLHYLQTLPLEDSVFSDSAAI
S
PEHRRQSTLPTQKCHLQDHYGPYPLAESERMQVLNGNGGKPRSFTLPRDSGFNHCCLNAPVSACDPQDD
V
QPPEVEEEEEEEEEEGEAAGENIGEK
SESREEKLGDSLQDLYRALEQASLSPLGEHRISTKMEYKLSFI
K
RCNDPVMNEKLHRLRILKSTLK
AREGEVAIIDKVLDNPDLTSKEFQQWKQMYLDLFLDICQNTTSNDPL
S
ISSEVDVITSSLAHTHSYIETHV




Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser